Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30117 * 124.93978 * 2 1 4 4 C 1.35814 * 109.65145 * 179.97438 * 3 2 1 5 5 C 1.39657 * 133.48812 * 180.34913 * 4 3 2 6 6 C 1.38424 * 119.69433 * 180.14005 * 5 4 3 7 7 N 1.39429 * 119.83813 * 179.76904 * 6 5 4 8 8 C 1.36835 * 120.00351 * 179.72172 * 7 6 5 9 9 H 1.08004 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.38767 * 120.00511 * 180.02562 * 8 7 6 11 11 N 1.31624 * 119.99455 * 359.72363 * 10 8 7 12 12 Si 1.86800 * 120.00537 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47364 * 179.72267 * 12 10 8 14 14 H 1.48508 * 109.46883 * 299.72390 * 12 10 8 15 15 H 1.48497 * 109.46870 * 59.72200 * 12 10 8 16 16 C 1.39567 * 120.33109 * 359.49080 * 6 5 4 17 17 C 1.37651 * 120.37331 * 0.23705 * 16 6 5 18 18 C 1.38917 * 119.95210 * 0.02562 * 17 16 6 19 19 N 1.36010 * 124.94189 * 179.97438 * 2 1 3 20 20 H 0.96997 * 126.34495 * 0.03878 * 19 2 1 21 21 H 1.09000 * 109.47627 * 89.97784 * 1 2 3 22 22 H 1.09009 * 109.47089 * 209.98030 * 1 2 3 23 23 H 1.09010 * 109.47584 * 329.97315 * 1 2 3 24 24 H 1.08006 * 120.15691 * 359.90287 * 5 4 3 25 25 H 0.96998 * 120.00200 * 359.72806 * 7 6 5 26 26 H 0.97000 * 119.99891 * 0.27521 * 11 10 8 27 27 H 1.08003 * 119.81501 * 180.25830 * 16 6 5 28 28 H 1.08003 * 120.02542 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2521 1.0666 0.0000 4 6 3.5622 0.7085 0.0006 5 6 4.7565 1.4325 0.0070 6 6 5.9662 0.7597 0.0027 7 7 7.1604 1.4794 0.0042 8 6 8.3581 0.8178 0.0057 9 1 8.3785 -0.2620 0.0052 10 6 9.5466 1.5341 0.0077 11 7 9.5217 2.8501 0.0027 12 14 11.1817 0.6309 0.0090 13 1 12.2920 1.6171 0.0044 14 1 11.2778 -0.2171 1.2244 15 1 11.2751 -0.2253 -1.2006 16 6 5.9967 -0.6357 0.0026 17 6 4.8246 -1.3574 0.0020 18 6 3.6029 -0.6962 0.0008 19 7 2.2859 -1.1149 0.0005 20 1 1.9747 -2.0336 0.0004 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8902 0.5136 23 1 -0.3634 0.8898 0.5143 24 1 4.7364 2.5123 0.0114 25 1 7.1421 2.4493 0.0043 26 1 8.6726 3.3192 0.0017 27 1 6.9452 -1.1521 0.0035 28 1 4.8547 -2.4370 0.0016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258913412.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = 46.363912 kcal Electronic energy + Delta-G solvation = -13576.891885 eV Core-core repulsion = 11206.183313 eV Total energy + Delta-G solvation = -2370.708573 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.77412 -39.26798 -36.32670 -33.94900 -33.32905 -31.58685 -30.17484 -27.63909 -26.24172 -23.20685 -22.71947 -21.57500 -19.81360 -18.64035 -18.32435 -17.20250 -16.30849 -16.26066 -15.41669 -15.12940 -14.63265 -14.12997 -13.97205 -13.68768 -13.38979 -13.32528 -13.13181 -12.57137 -12.29037 -11.92116 -11.59277 -11.49016 -11.41982 -10.78693 -10.36051 -8.98856 -8.84998 -8.41016 -5.75737 0.18060 0.89223 1.56518 1.67857 1.82557 1.99815 2.18883 2.49004 2.93252 3.14536 3.34269 3.50693 3.87583 4.32445 4.42843 4.60376 4.66032 4.76061 4.78075 4.85025 5.09206 5.15755 5.48367 5.52685 5.65423 5.75604 6.02528 6.09266 6.62780 6.75393 7.13824 7.43862 7.51135 8.61053 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.076772 B = 0.006212 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.628366 B = 4506.243426 C = 4855.725190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.284 3.716 3 N -0.561 5.561 4 C 0.086 3.914 5 C -0.247 4.247 6 C 0.202 3.798 7 N -0.609 5.609 8 C -0.390 4.390 9 H 0.104 0.896 10 C -0.067 4.067 11 N -0.936 5.936 12 Si 1.137 2.863 13 H -0.287 1.287 14 H -0.265 1.265 15 H -0.265 1.265 16 C -0.186 4.186 17 C -0.048 4.048 18 C -0.049 4.049 19 N -0.583 5.583 20 H 0.435 0.565 21 H 0.103 0.897 22 H 0.111 0.889 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.375 0.625 26 H 0.251 0.749 27 H 0.131 0.869 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 -11.695 0.000 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.017 3.983 3 N -0.286 5.286 4 C -0.031 4.031 5 C -0.277 4.277 6 C 0.086 3.914 7 N -0.218 5.218 8 C -0.519 4.519 9 H 0.122 0.878 10 C -0.262 4.262 11 N -0.576 5.576 12 Si 0.956 3.044 13 H -0.212 1.212 14 H -0.190 1.190 15 H -0.190 1.190 16 C -0.209 4.209 17 C -0.069 4.069 18 C -0.158 4.158 19 N -0.199 5.199 20 H 0.277 0.723 21 H 0.122 0.878 22 H 0.129 0.871 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.208 0.792 26 H 0.062 0.938 27 H 0.148 0.852 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.232 -10.710 -0.001 16.258 hybrid contribution -1.296 -0.204 -0.010 1.311 sum -13.527 -10.914 -0.011 17.381 Atomic orbital electron populations 1.20560 0.80663 1.05995 1.05517 1.24496 0.97273 0.80710 0.95801 1.70325 1.01192 1.29972 1.27142 1.18706 0.91197 0.91531 1.01715 1.19063 0.89080 0.97644 1.21927 1.17756 0.85397 0.92194 0.96040 1.40930 1.02956 1.06572 1.71356 1.20800 0.84845 0.94811 1.51413 0.87792 1.27945 1.06271 0.96295 0.95692 1.71024 1.28292 1.08299 1.49935 0.82592 0.69662 0.73815 0.78285 1.21241 1.19015 1.19025 1.20630 0.98535 0.91600 1.10121 1.19875 0.87645 0.99875 0.99541 1.18628 0.86524 0.94414 1.16240 1.42662 1.03394 1.10016 1.63806 0.72296 0.87849 0.87055 0.88797 0.88734 0.79160 0.93800 0.85176 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.51 71.23 0.75 -0.23 15 2 C 0.28 7.86 8.08 137.93 1.11 8.97 15 3 N -0.56 -21.93 11.27 -180.01 -2.03 -23.96 15 4 C 0.09 3.75 7.22 39.43 0.28 4.04 15 5 C -0.25 -11.84 9.94 22.66 0.23 -11.61 15 6 C 0.20 9.84 6.61 38.30 0.25 10.09 15 7 N -0.61 -32.46 5.43 -184.34 -1.00 -33.46 15 8 C -0.39 -21.09 9.55 84.04 0.80 -20.29 15 9 H 0.10 5.26 5.65 -2.91 -0.02 5.25 15 10 C -0.07 -3.63 5.50 84.85 0.47 -3.17 15 11 N -0.94 -55.56 13.70 21.64 0.30 -55.27 15 12 Si 1.14 47.20 29.92 68.60 2.05 49.25 15 13 H -0.29 -12.21 7.11 99.48 0.71 -11.50 15 14 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 15 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 16 C -0.19 -7.85 9.28 22.45 0.21 -7.64 15 17 C -0.05 -1.67 10.05 22.29 0.22 -1.45 15 18 C -0.05 -1.78 7.30 38.86 0.28 -1.50 15 19 N -0.58 -15.06 6.24 -179.06 -1.12 -16.18 15 20 H 0.44 6.92 8.96 -92.71 -0.83 6.09 15 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.11 0.80 8.14 -2.38 -0.02 0.78 15 23 H 0.09 1.36 8.14 -2.38 -0.02 1.34 15 24 H 0.09 4.61 8.06 -2.91 -0.02 4.58 15 25 H 0.38 20.48 6.72 -92.71 -0.62 19.85 15 26 H 0.25 15.01 6.77 -92.71 -0.63 14.38 15 27 H 0.13 5.36 5.92 -2.91 -0.02 5.34 15 28 H 0.15 3.89 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -72.74 246.50 2.71 -70.03 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.10 Total: 32.37 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.61 Total: -22.78 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -3.85 Total: -128.87 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Total: -72.74 2.71 -70.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258913412.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.396 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds