Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46849 * 299.99637 * 3 2 1 6 6 H 1.48496 * 109.47051 * 59.99585 * 3 2 1 7 7 C 1.37872 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.50708 * 109.46936 * 179.97438 * 9 7 2 11 11 N 1.30576 * 125.54109 * 305.04290 * 10 9 7 12 12 C 1.33773 * 109.62919 * 179.69410 * 11 10 9 13 13 C 1.36291 * 107.99638 * 0.43564 * 12 11 10 14 14 C 1.47368 * 126.76460 * 179.83363 * 13 12 11 15 15 C 1.36453 * 126.08077 * 180.02562 * 14 13 12 16 16 C 1.40432 * 107.34250 * 180.15910 * 15 14 13 17 17 C 1.35043 * 107.73027 * 359.56707 * 16 15 14 18 18 N 1.36479 * 108.51542 * 0.26829 * 17 16 15 19 19 H 0.96997 * 125.72023 * 180.02562 * 18 17 16 20 20 N 1.35764 * 125.53881 * 125.00363 * 10 9 7 21 21 H 0.96998 * 126.50755 * 0.02562 * 20 10 9 22 22 H 0.97002 * 119.99681 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46862 * 60.00191 * 9 7 2 24 24 H 1.08995 * 109.46991 * 299.99627 * 9 7 2 25 25 H 1.08006 * 126.00075 * 180.28083 * 12 11 10 26 26 H 1.08002 * 126.32909 * 359.97438 * 15 14 13 27 27 H 1.08002 * 126.13693 * 179.83866 * 16 15 14 28 28 H 1.08005 * 125.74466 * 180.26658 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 3.1872 -3.8251 -0.8694 12 6 3.8673 -4.9362 -0.5652 13 6 3.3018 -5.4850 0.5468 14 6 3.7239 -6.7185 1.2337 15 6 3.1466 -7.2561 2.3471 16 6 3.8601 -8.4225 2.6670 17 6 4.8373 -8.5721 1.7470 18 7 4.7638 -7.5342 0.8639 19 1 5.3482 -7.3963 0.1022 20 7 2.2614 -4.6563 0.9054 21 1 1.6646 -4.7731 1.6611 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 4.7142 -5.3305 -1.1073 26 1 2.2995 -6.8565 2.8849 27 1 3.6602 -9.0840 3.4970 28 1 5.5562 -9.3776 1.7154 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259007614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = 88.537568 kcal Electronic energy + Delta-G solvation = -13378.796921 eV Core-core repulsion = 11009.917135 eV Total energy + Delta-G solvation = -2368.879786 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50927 -40.47681 -33.36551 -32.07547 -31.15934 -30.68975 -28.85898 -26.14735 -23.33149 -21.72607 -20.59652 -20.05931 -19.55954 -18.15049 -16.32960 -15.93816 -14.64725 -14.51613 -13.86396 -13.83916 -13.71424 -13.28409 -12.49814 -12.30241 -12.17050 -11.97911 -11.51650 -10.78622 -10.74504 -9.95445 -9.50794 -9.43514 -9.25522 -8.90591 -8.76029 -8.45775 -7.03862 -6.08234 -4.09953 1.71395 2.78050 3.04668 3.31340 3.35173 3.39279 3.46232 3.85245 3.90316 4.45811 5.02741 5.13764 5.27730 5.38606 5.41799 5.51039 5.87991 6.04410 6.18872 6.24690 6.60293 7.00902 7.07507 7.13245 7.35146 7.41154 7.56236 7.89770 7.95183 8.25164 8.85100 8.94839 9.53593 11.02397 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.063750 B = 0.005669 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.113339 B = 4938.277765 C = 5061.037181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.093 3.907 10 C 0.279 3.721 11 N -0.490 5.490 12 C -0.011 4.011 13 C -0.005 4.005 14 C 0.112 3.888 15 C -0.204 4.204 16 C -0.194 4.194 17 C -0.018 4.018 18 N -0.550 5.550 19 H 0.415 0.585 20 N -0.565 5.565 21 H 0.416 0.584 22 H 0.263 0.737 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.156 0.844 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 -14.527 3.695 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.054 3.946 10 C 0.016 3.984 11 N -0.208 5.208 12 C -0.163 4.163 13 C -0.120 4.120 14 C -0.002 4.002 15 C -0.228 4.228 16 C -0.219 4.219 17 C -0.148 4.148 18 N -0.146 5.146 19 H 0.252 0.748 20 N -0.168 5.168 21 H 0.254 0.746 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.174 0.826 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.896 -13.885 2.880 15.768 hybrid contribution 0.309 0.246 0.762 0.858 sum 7.205 -13.639 3.642 15.849 Atomic orbital electron populations 1.69953 1.06012 1.26949 1.50768 1.24981 0.94932 0.99411 0.95116 0.86375 0.80176 0.83029 0.77534 1.19595 1.20851 1.21048 1.21011 0.93525 0.89060 1.50582 0.91696 1.17939 0.90723 0.86819 0.99118 1.24867 0.97656 0.90512 0.85360 1.70205 1.07214 1.16531 1.26810 1.22286 1.02134 0.95388 0.96500 1.18267 0.97361 0.95124 1.01237 1.17520 0.93027 0.92277 0.97422 1.20850 1.03843 0.99090 0.99064 1.20748 0.99089 1.00161 1.01925 1.21813 1.04122 0.94661 0.94252 1.41876 1.26835 1.20498 1.25366 0.74797 1.43455 1.26484 1.20768 1.26135 0.74620 0.92790 0.93016 0.94629 0.82614 0.85070 0.84738 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.50 -14.14 9.06 -34.44 -0.31 -14.45 15 8 H 0.06 1.88 7.74 -52.49 -0.41 1.47 15 9 C 0.09 2.35 5.60 -29.03 -0.16 2.18 15 10 C 0.28 6.31 7.38 -154.69 -1.14 5.16 15 11 N -0.49 -11.26 11.16 -10.34 -0.12 -11.37 15 12 C -0.01 -0.21 11.84 -17.41 -0.21 -0.42 15 13 C 0.00 -0.08 7.09 -82.19 -0.58 -0.66 15 14 C 0.11 1.66 7.04 -82.38 -0.58 1.08 15 15 C -0.20 -2.84 10.81 -39.40 -0.43 -3.27 15 16 C -0.19 -2.31 10.83 -39.89 -0.43 -2.74 15 17 C -0.02 -0.18 11.93 -16.62 -0.20 -0.38 15 18 N -0.55 -6.41 6.12 -9.48 -0.06 -6.47 15 19 H 0.42 3.75 8.96 -40.82 -0.37 3.39 15 20 N -0.57 -10.49 6.23 -6.80 -0.04 -10.54 15 21 H 0.42 6.51 8.96 -40.82 -0.37 6.15 15 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.05 1.39 8.14 -51.93 -0.42 0.96 15 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.16 2.34 8.06 -52.48 -0.42 1.92 15 26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.16 1.12 8.06 -52.48 -0.42 0.70 15 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -32.25 257.17 -7.57 -39.82 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.81 Total: 5.25 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.14 Total: -12.01 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.52 Total: -53.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.25 -7.57 -39.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259007614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.359 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds