Wall clock time and date at job start Mon Mar 30 2020 02:24:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86805 * 120.00097 * 2 1
4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46849 * 299.99637 * 3 2 1
6 6 H 1.48496 * 109.47051 * 59.99585 * 3 2 1
7 7 C 1.37872 * 119.99763 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99778 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00088 * 0.02562 * 7 2 1
10 10 C 1.50708 * 109.46936 * 179.97438 * 9 7 2
11 11 N 1.30576 * 125.54109 * 305.04290 * 10 9 7
12 12 C 1.33773 * 109.62919 * 179.69410 * 11 10 9
13 13 C 1.36291 * 107.99638 * 0.43564 * 12 11 10
14 14 C 1.47368 * 126.76460 * 179.83363 * 13 12 11
15 15 C 1.36453 * 126.08077 * 180.02562 * 14 13 12
16 16 C 1.40432 * 107.34250 * 180.15910 * 15 14 13
17 17 C 1.35043 * 107.73027 * 359.56707 * 16 15 14
18 18 N 1.36479 * 108.51542 * 0.26829 * 17 16 15
19 19 H 0.96997 * 125.72023 * 180.02562 * 18 17 16
20 20 N 1.35764 * 125.53881 * 125.00363 * 10 9 7
21 21 H 0.96998 * 126.50755 * 0.02562 * 20 10 9
22 22 H 0.97002 * 119.99681 * 0.02562 * 1 2 3
23 23 H 1.08994 * 109.46862 * 60.00191 * 9 7 2
24 24 H 1.08995 * 109.46991 * 299.99627 * 9 7 2
25 25 H 1.08006 * 126.00075 * 180.28083 * 12 11 10
26 26 H 1.08002 * 126.32909 * 359.97438 * 15 14 13
27 27 H 1.08002 * 126.13693 * 179.83866 * 16 15 14
28 28 H 1.08005 * 125.74466 * 180.26658 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8904 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2303 -3.6446 0.0005
11 7 3.1872 -3.8251 -0.8694
12 6 3.8673 -4.9362 -0.5652
13 6 3.3018 -5.4850 0.5468
14 6 3.7239 -6.7185 1.2337
15 6 3.1466 -7.2561 2.3471
16 6 3.8601 -8.4225 2.6670
17 6 4.8373 -8.5721 1.7470
18 7 4.7638 -7.5342 0.8639
19 1 5.3482 -7.3963 0.1022
20 7 2.2614 -4.6563 0.9054
21 1 1.6646 -4.7731 1.6611
22 1 -0.4850 0.8401 -0.0004
23 1 0.6247 -2.5570 -0.8897
24 1 0.6240 -2.5567 0.8903
25 1 4.7142 -5.3305 -1.1073
26 1 2.2995 -6.8565 2.8849
27 1 3.6602 -9.0840 3.4970
28 1 5.5562 -9.3776 1.7154
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259007614.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:24:12
Heat of formation + Delta-G solvation = 88.537568 kcal
Electronic energy + Delta-G solvation = -13378.796921 eV
Core-core repulsion = 11009.917135 eV
Total energy + Delta-G solvation = -2368.879786 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.50927 -40.47681 -33.36551 -32.07547 -31.15934 -30.68975 -28.85898 -26.14735
-23.33149 -21.72607 -20.59652 -20.05931 -19.55954 -18.15049 -16.32960 -15.93816
-14.64725 -14.51613 -13.86396 -13.83916 -13.71424 -13.28409 -12.49814 -12.30241
-12.17050 -11.97911 -11.51650 -10.78622 -10.74504 -9.95445 -9.50794 -9.43514
-9.25522 -8.90591 -8.76029 -8.45775 -7.03862 -6.08234 -4.09953 1.71395
2.78050 3.04668 3.31340 3.35173 3.39279 3.46232 3.85245 3.90316
4.45811 5.02741 5.13764 5.27730 5.38606 5.41799 5.51039 5.87991
6.04410 6.18872 6.24690 6.60293 7.00902 7.07507 7.13245 7.35146
7.41154 7.56236 7.89770 7.95183 8.25164 8.85100 8.94839 9.53593
11.02397
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.063750 B = 0.005669 C = 0.005531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 439.113339 B = 4938.277765 C = 5061.037181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.057 3.943
3 Si 0.901 3.099
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.284 1.284
7 C -0.503 4.503
8 H 0.065 0.935
9 C 0.093 3.907
10 C 0.279 3.721
11 N -0.490 5.490
12 C -0.011 4.011
13 C -0.005 4.005
14 C 0.112 3.888
15 C -0.204 4.204
16 C -0.194 4.194
17 C -0.018 4.018
18 N -0.550 5.550
19 H 0.415 0.585
20 N -0.565 5.565
21 H 0.416 0.584
22 H 0.263 0.737
23 H 0.052 0.948
24 H 0.036 0.964
25 H 0.156 0.844
26 H 0.131 0.869
27 H 0.135 0.865
28 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.754 -14.527 3.695 16.441
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.144 4.144
3 Si 0.729 3.271
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.210 1.210
7 C -0.542 4.542
8 H 0.083 0.917
9 C 0.054 3.946
10 C 0.016 3.984
11 N -0.208 5.208
12 C -0.163 4.163
13 C -0.120 4.120
14 C -0.002 4.002
15 C -0.228 4.228
16 C -0.219 4.219
17 C -0.148 4.148
18 N -0.146 5.146
19 H 0.252 0.748
20 N -0.168 5.168
21 H 0.254 0.746
22 H 0.072 0.928
23 H 0.070 0.930
24 H 0.054 0.946
25 H 0.174 0.826
26 H 0.149 0.851
27 H 0.153 0.847
28 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 6.896 -13.885 2.880 15.768
hybrid contribution 0.309 0.246 0.762 0.858
sum 7.205 -13.639 3.642 15.849
Atomic orbital electron populations
1.69953 1.06012 1.26949 1.50768 1.24981 0.94932 0.99411 0.95116
0.86375 0.80176 0.83029 0.77534 1.19595 1.20851 1.21048 1.21011
0.93525 0.89060 1.50582 0.91696 1.17939 0.90723 0.86819 0.99118
1.24867 0.97656 0.90512 0.85360 1.70205 1.07214 1.16531 1.26810
1.22286 1.02134 0.95388 0.96500 1.18267 0.97361 0.95124 1.01237
1.17520 0.93027 0.92277 0.97422 1.20850 1.03843 0.99090 0.99064
1.20748 0.99089 1.00161 1.01925 1.21813 1.04122 0.94661 0.94252
1.41876 1.26835 1.20498 1.25366 0.74797 1.43455 1.26484 1.20768
1.26135 0.74620 0.92790 0.93016 0.94629 0.82614 0.85070 0.84738
0.81794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 15
2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15
3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15
4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15
5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15
6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15
7 C -0.50 -14.14 9.06 -34.44 -0.31 -14.45 15
8 H 0.06 1.88 7.74 -52.49 -0.41 1.47 15
9 C 0.09 2.35 5.60 -29.03 -0.16 2.18 15
10 C 0.28 6.31 7.38 -154.69 -1.14 5.16 15
11 N -0.49 -11.26 11.16 -10.34 -0.12 -11.37 15
12 C -0.01 -0.21 11.84 -17.41 -0.21 -0.42 15
13 C 0.00 -0.08 7.09 -82.19 -0.58 -0.66 15
14 C 0.11 1.66 7.04 -82.38 -0.58 1.08 15
15 C -0.20 -2.84 10.81 -39.40 -0.43 -3.27 15
16 C -0.19 -2.31 10.83 -39.89 -0.43 -2.74 15
17 C -0.02 -0.18 11.93 -16.62 -0.20 -0.38 15
18 N -0.55 -6.41 6.12 -9.48 -0.06 -6.47 15
19 H 0.42 3.75 8.96 -40.82 -0.37 3.39 15
20 N -0.57 -10.49 6.23 -6.80 -0.04 -10.54 15
21 H 0.42 6.51 8.96 -40.82 -0.37 6.15 15
22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15
23 H 0.05 1.39 8.14 -51.93 -0.42 0.96 15
24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15
25 H 0.16 2.34 8.06 -52.48 -0.42 1.92 15
26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15
27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15
28 H 0.16 1.12 8.06 -52.48 -0.42 0.70 15
LS Contribution 257.17 15.07 3.88 3.88
Total: -1.00 -32.25 257.17 -7.57 -39.82
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: -2.81 Total: 5.25 kcal
Atomic # 6 Polarization: -7.87 SS G_CDS: -4.14 Total: -12.01 kcal
Atomic # 7 Polarization: -54.15 SS G_CDS: 0.52 Total: -53.63 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -32.25 -7.57 -39.82 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259007614.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.359 kcal
(2) G-P(sol) polarization free energy of solvation -32.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.110 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds