Wall clock time and date at job start Mon Mar 30 2020 02:24:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86805 * 120.00097 * 2 1
4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46849 * 299.99637 * 3 2 1
6 6 H 1.48496 * 109.47051 * 59.99585 * 3 2 1
7 7 C 1.37872 * 119.99763 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99778 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00088 * 0.02562 * 7 2 1
10 10 C 1.50708 * 109.46936 * 179.97438 * 9 7 2
11 11 N 1.30576 * 125.54109 * 305.04290 * 10 9 7
12 12 C 1.33773 * 109.62919 * 179.69410 * 11 10 9
13 13 C 1.36291 * 107.99638 * 0.43564 * 12 11 10
14 14 C 1.47368 * 126.76460 * 179.83363 * 13 12 11
15 15 C 1.36453 * 126.08077 * 180.02562 * 14 13 12
16 16 C 1.40432 * 107.34250 * 180.15910 * 15 14 13
17 17 C 1.35043 * 107.73027 * 359.56707 * 16 15 14
18 18 N 1.36479 * 108.51542 * 0.26829 * 17 16 15
19 19 H 0.96997 * 125.72023 * 180.02562 * 18 17 16
20 20 N 1.35764 * 125.53881 * 125.00363 * 10 9 7
21 21 H 0.96998 * 126.50755 * 0.02562 * 20 10 9
22 22 H 0.97002 * 119.99681 * 0.02562 * 1 2 3
23 23 H 1.08994 * 109.46862 * 60.00191 * 9 7 2
24 24 H 1.08995 * 109.46991 * 299.99627 * 9 7 2
25 25 H 1.08006 * 126.00075 * 180.28083 * 12 11 10
26 26 H 1.08002 * 126.32909 * 359.97438 * 15 14 13
27 27 H 1.08002 * 126.13693 * 179.83866 * 16 15 14
28 28 H 1.08005 * 125.74466 * 180.26658 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8904 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2303 -3.6446 0.0005
11 7 3.1872 -3.8251 -0.8694
12 6 3.8673 -4.9362 -0.5652
13 6 3.3018 -5.4850 0.5468
14 6 3.7239 -6.7185 1.2337
15 6 3.1466 -7.2561 2.3471
16 6 3.8601 -8.4225 2.6670
17 6 4.8373 -8.5721 1.7470
18 7 4.7638 -7.5342 0.8639
19 1 5.3482 -7.3963 0.1022
20 7 2.2614 -4.6563 0.9054
21 1 1.6646 -4.7731 1.6611
22 1 -0.4850 0.8401 -0.0004
23 1 0.6247 -2.5570 -0.8897
24 1 0.6240 -2.5567 0.8903
25 1 4.7142 -5.3305 -1.1073
26 1 2.2995 -6.8565 2.8849
27 1 3.6602 -9.0840 3.4970
28 1 5.5562 -9.3776 1.7154
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259007614.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:24:12
Heat of formation + Delta-G solvation = 67.058510 kcal
Electronic energy + Delta-G solvation = -13379.728322 eV
Core-core repulsion = 11009.917135 eV
Total energy + Delta-G solvation = -2369.811188 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.92542 -41.56315 -35.43508 -33.59787 -32.70057 -31.79857 -30.37692 -27.65008
-25.29243 -23.02204 -21.89975 -21.20067 -20.81082 -19.44281 -18.46698 -17.32302
-16.48920 -16.09040 -15.14462 -14.98999 -14.90788 -14.41562 -14.32258 -13.90139
-13.53539 -13.29823 -13.11397 -12.70467 -12.65699 -11.97339 -11.54489 -11.04721
-10.87825 -10.62888 -10.04661 -9.81726 -8.38292 -8.16987 -6.32345 0.46652
1.40769 1.42050 1.55363 1.74046 1.87139 2.06541 2.39827 2.46452
2.68484 3.10686 3.72430 3.97663 4.25058 4.45174 4.45368 4.50909
4.67150 4.98746 5.19192 5.30519 5.32458 5.39673 5.70149 5.82204
5.99802 6.06600 6.11699 6.52305 6.72865 6.75526 7.27345 7.35287
8.87926
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.063750 B = 0.005669 C = 0.005531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 439.113339 B = 4938.277765 C = 5061.037181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.009 3.991
3 Si 0.967 3.033
4 H -0.272 1.272
5 H -0.275 1.275
6 H -0.273 1.273
7 C -0.521 4.521
8 H 0.050 0.950
9 C 0.104 3.896
10 C 0.242 3.758
11 N -0.521 5.521
12 C -0.040 4.040
13 C 0.027 3.973
14 C 0.068 3.932
15 C -0.204 4.204
16 C -0.217 4.217
17 C 0.012 3.988
18 N -0.541 5.541
19 H 0.428 0.572
20 N -0.554 5.554
21 H 0.427 0.573
22 H 0.268 0.732
23 H 0.025 0.975
24 H 0.031 0.969
25 H 0.189 0.811
26 H 0.133 0.867
27 H 0.156 0.844
28 H 0.209 0.791
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.510 -16.225 4.551 18.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.189 4.189
3 Si 0.792 3.208
4 H -0.197 1.197
5 H -0.201 1.201
6 H -0.198 1.198
7 C -0.560 4.560
8 H 0.069 0.931
9 C 0.065 3.935
10 C -0.021 4.021
11 N -0.240 5.240
12 C -0.189 4.189
13 C -0.089 4.089
14 C -0.046 4.046
15 C -0.230 4.230
16 C -0.241 4.241
17 C -0.120 4.120
18 N -0.138 5.138
19 H 0.267 0.733
20 N -0.159 5.159
21 H 0.267 0.733
22 H 0.077 0.923
23 H 0.043 0.957
24 H 0.049 0.951
25 H 0.206 0.794
26 H 0.151 0.849
27 H 0.174 0.826
28 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges 8.648 -15.582 3.730 18.207
hybrid contribution -0.174 0.531 0.582 0.807
sum 8.474 -15.051 4.312 17.803
Atomic orbital electron populations
1.70043 1.07293 1.28084 1.51213 1.25805 0.95822 1.02791 0.94526
0.85366 0.78626 0.78775 0.78069 1.19672 1.20087 1.19791 1.21218
0.93043 0.90767 1.50981 0.93123 1.17549 0.90879 0.87499 0.97557
1.24065 0.98685 0.91719 0.87672 1.70056 1.07786 1.18516 1.27606
1.22783 1.03476 0.94843 0.97840 1.18667 0.95283 0.94942 1.00017
1.17328 0.95721 0.92677 0.98859 1.21175 1.03687 0.99665 0.98460
1.21107 0.99545 1.00018 1.03438 1.22594 1.03262 0.94026 0.92120
1.41960 1.25961 1.20024 1.25845 0.73323 1.43289 1.26870 1.19977
1.25743 0.73301 0.92350 0.95688 0.95065 0.79423 0.84937 0.82604
0.77426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 15
2 C 0.01 0.52 5.46 84.65 0.46 0.98 15
3 Si 0.97 44.99 29.54 68.60 2.03 47.01 15
4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15
5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15
6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15
7 C -0.52 -30.32 9.06 25.60 0.23 -30.09 15
8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 15
9 C 0.10 5.53 5.60 29.11 0.16 5.70 15
10 C 0.24 11.33 7.38 137.88 1.02 12.35 15
11 N -0.52 -24.54 11.16 -186.61 -2.08 -26.62 15
12 C -0.04 -1.48 11.84 83.94 0.99 -0.48 15
13 C 0.03 0.93 7.09 40.16 0.28 1.22 15
14 C 0.07 1.87 7.04 40.29 0.28 2.16 15
15 C -0.20 -5.25 10.81 22.39 0.24 -5.01 15
16 C -0.22 -4.36 10.83 22.07 0.24 -4.12 15
17 C 0.01 0.20 11.93 83.23 0.99 1.19 15
18 N -0.54 -10.76 6.12 -183.92 -1.13 -11.88 15
19 H 0.43 6.24 8.96 -92.71 -0.83 5.41 15
20 N -0.55 -20.88 6.23 -175.43 -1.09 -21.97 15
21 H 0.43 13.58 8.96 -92.71 -0.83 12.75 15
22 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15
23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15
24 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15
25 H 0.19 5.38 8.06 -2.91 -0.02 5.36 15
26 H 0.13 3.23 8.06 -2.91 -0.02 3.21 15
27 H 0.16 2.40 8.06 -2.91 -0.02 2.37 15
28 H 0.21 1.51 8.06 -2.91 -0.02 1.49 15
Total: -1.00 -70.82 257.17 2.45 -68.37
By element:
Atomic # 1 Polarization: 16.08 SS G_CDS: -0.47 Total: 15.61 kcal
Atomic # 6 Polarization: -21.02 SS G_CDS: 4.91 Total: -16.11 kcal
Atomic # 7 Polarization: -110.87 SS G_CDS: -4.02 Total: -114.88 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -70.82 2.45 -68.37 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259007614.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.426 kcal
(2) G-P(sol) polarization free energy of solvation -70.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.605 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds