Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46849 * 299.99637 * 3 2 1 6 6 H 1.48496 * 109.47051 * 59.99585 * 3 2 1 7 7 C 1.37872 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.50708 * 109.46936 * 179.97438 * 9 7 2 11 11 N 1.30576 * 125.54109 * 305.04290 * 10 9 7 12 12 C 1.33773 * 109.62919 * 179.69410 * 11 10 9 13 13 C 1.36291 * 107.99638 * 0.43564 * 12 11 10 14 14 C 1.47368 * 126.76460 * 179.83363 * 13 12 11 15 15 C 1.36453 * 126.08077 * 180.02562 * 14 13 12 16 16 C 1.40432 * 107.34250 * 180.15910 * 15 14 13 17 17 C 1.35043 * 107.73027 * 359.56707 * 16 15 14 18 18 N 1.36479 * 108.51542 * 0.26829 * 17 16 15 19 19 H 0.96997 * 125.72023 * 180.02562 * 18 17 16 20 20 N 1.35764 * 125.53881 * 125.00363 * 10 9 7 21 21 H 0.96998 * 126.50755 * 0.02562 * 20 10 9 22 22 H 0.97002 * 119.99681 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46862 * 60.00191 * 9 7 2 24 24 H 1.08995 * 109.46991 * 299.99627 * 9 7 2 25 25 H 1.08006 * 126.00075 * 180.28083 * 12 11 10 26 26 H 1.08002 * 126.32909 * 359.97438 * 15 14 13 27 27 H 1.08002 * 126.13693 * 179.83866 * 16 15 14 28 28 H 1.08005 * 125.74466 * 180.26658 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 3.1872 -3.8251 -0.8694 12 6 3.8673 -4.9362 -0.5652 13 6 3.3018 -5.4850 0.5468 14 6 3.7239 -6.7185 1.2337 15 6 3.1466 -7.2561 2.3471 16 6 3.8601 -8.4225 2.6670 17 6 4.8373 -8.5721 1.7470 18 7 4.7638 -7.5342 0.8639 19 1 5.3482 -7.3963 0.1022 20 7 2.2614 -4.6563 0.9054 21 1 1.6646 -4.7731 1.6611 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 4.7142 -5.3305 -1.1073 26 1 2.2995 -6.8565 2.8849 27 1 3.6602 -9.0840 3.4970 28 1 5.5562 -9.3776 1.7154 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259007614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = 67.058510 kcal Electronic energy + Delta-G solvation = -13379.728322 eV Core-core repulsion = 11009.917135 eV Total energy + Delta-G solvation = -2369.811188 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.92542 -41.56315 -35.43508 -33.59787 -32.70057 -31.79857 -30.37692 -27.65008 -25.29243 -23.02204 -21.89975 -21.20067 -20.81082 -19.44281 -18.46698 -17.32302 -16.48920 -16.09040 -15.14462 -14.98999 -14.90788 -14.41562 -14.32258 -13.90139 -13.53539 -13.29823 -13.11397 -12.70467 -12.65699 -11.97339 -11.54489 -11.04721 -10.87825 -10.62888 -10.04661 -9.81726 -8.38292 -8.16987 -6.32345 0.46652 1.40769 1.42050 1.55363 1.74046 1.87139 2.06541 2.39827 2.46452 2.68484 3.10686 3.72430 3.97663 4.25058 4.45174 4.45368 4.50909 4.67150 4.98746 5.19192 5.30519 5.32458 5.39673 5.70149 5.82204 5.99802 6.06600 6.11699 6.52305 6.72865 6.75526 7.27345 7.35287 8.87926 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.063750 B = 0.005669 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.113339 B = 4938.277765 C = 5061.037181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.050 0.950 9 C 0.104 3.896 10 C 0.242 3.758 11 N -0.521 5.521 12 C -0.040 4.040 13 C 0.027 3.973 14 C 0.068 3.932 15 C -0.204 4.204 16 C -0.217 4.217 17 C 0.012 3.988 18 N -0.541 5.541 19 H 0.428 0.572 20 N -0.554 5.554 21 H 0.427 0.573 22 H 0.268 0.732 23 H 0.025 0.975 24 H 0.031 0.969 25 H 0.189 0.811 26 H 0.133 0.867 27 H 0.156 0.844 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 -16.225 4.551 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.065 3.935 10 C -0.021 4.021 11 N -0.240 5.240 12 C -0.189 4.189 13 C -0.089 4.089 14 C -0.046 4.046 15 C -0.230 4.230 16 C -0.241 4.241 17 C -0.120 4.120 18 N -0.138 5.138 19 H 0.267 0.733 20 N -0.159 5.159 21 H 0.267 0.733 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.206 0.794 26 H 0.151 0.849 27 H 0.174 0.826 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.648 -15.582 3.730 18.207 hybrid contribution -0.174 0.531 0.582 0.807 sum 8.474 -15.051 4.312 17.803 Atomic orbital electron populations 1.70043 1.07293 1.28084 1.51213 1.25805 0.95822 1.02791 0.94526 0.85366 0.78626 0.78775 0.78069 1.19672 1.20087 1.19791 1.21218 0.93043 0.90767 1.50981 0.93123 1.17549 0.90879 0.87499 0.97557 1.24065 0.98685 0.91719 0.87672 1.70056 1.07786 1.18516 1.27606 1.22783 1.03476 0.94843 0.97840 1.18667 0.95283 0.94942 1.00017 1.17328 0.95721 0.92677 0.98859 1.21175 1.03687 0.99665 0.98460 1.21107 0.99545 1.00018 1.03438 1.22594 1.03262 0.94026 0.92120 1.41960 1.25961 1.20024 1.25845 0.73323 1.43289 1.26870 1.19977 1.25743 0.73301 0.92350 0.95688 0.95065 0.79423 0.84937 0.82604 0.77426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 15 2 C 0.01 0.52 5.46 84.65 0.46 0.98 15 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.52 -30.32 9.06 25.60 0.23 -30.09 15 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.10 5.53 5.60 29.11 0.16 5.70 15 10 C 0.24 11.33 7.38 137.88 1.02 12.35 15 11 N -0.52 -24.54 11.16 -186.61 -2.08 -26.62 15 12 C -0.04 -1.48 11.84 83.94 0.99 -0.48 15 13 C 0.03 0.93 7.09 40.16 0.28 1.22 15 14 C 0.07 1.87 7.04 40.29 0.28 2.16 15 15 C -0.20 -5.25 10.81 22.39 0.24 -5.01 15 16 C -0.22 -4.36 10.83 22.07 0.24 -4.12 15 17 C 0.01 0.20 11.93 83.23 0.99 1.19 15 18 N -0.54 -10.76 6.12 -183.92 -1.13 -11.88 15 19 H 0.43 6.24 8.96 -92.71 -0.83 5.41 15 20 N -0.55 -20.88 6.23 -175.43 -1.09 -21.97 15 21 H 0.43 13.58 8.96 -92.71 -0.83 12.75 15 22 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.19 5.38 8.06 -2.91 -0.02 5.36 15 26 H 0.13 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.16 2.40 8.06 -2.91 -0.02 2.37 15 28 H 0.21 1.51 8.06 -2.91 -0.02 1.49 15 Total: -1.00 -70.82 257.17 2.45 -68.37 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.47 Total: 15.61 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.91 Total: -16.11 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.02 Total: -114.88 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.82 2.45 -68.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259007614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.426 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds