Wall clock time and date at job start Mon Mar 30 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47280 * 240.00073 * 3 2 1 5 5 H 1.48503 * 109.46680 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46730 * 119.99737 * 3 2 1 7 7 C 1.37875 * 119.99379 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.38301 * 120.08607 * 270.01943 * 11 10 9 13 13 C 1.37831 * 120.23030 * 179.97438 * 12 11 10 14 14 C 1.39669 * 120.28352 * 0.02562 * 13 12 11 15 15 C 1.38590 * 119.02716 * 359.97438 * 14 13 12 16 16 C 1.38171 * 120.47980 * 0.02562 * 15 14 13 17 17 C 1.51219 * 108.54310 * 180.02562 * 15 14 13 18 18 C 1.53751 * 104.53352 * 0.02562 * 17 15 14 19 19 N 1.39585 * 129.32081 * 179.97438 * 14 13 12 20 20 H 0.97001 * 119.99477 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46865 * 60.00852 * 9 7 2 22 22 H 1.08991 * 109.47396 * 299.99972 * 9 7 2 23 23 H 1.08997 * 109.47199 * 60.00037 * 10 9 7 24 24 H 1.09005 * 109.47023 * 300.00136 * 10 9 7 25 25 H 1.07991 * 119.88338 * 0.02562 * 12 11 10 26 26 H 1.08003 * 119.85499 * 180.02562 * 13 12 11 27 27 H 1.07996 * 119.92915 * 180.02562 * 16 15 14 28 28 H 1.09005 * 110.42398 * 118.76399 * 17 15 14 29 29 H 1.09000 * 110.42462 * 241.23533 * 17 15 14 30 30 H 1.09004 * 110.30130 * 241.07095 * 18 17 15 31 31 H 1.09003 * 110.30057 * 118.93013 * 18 17 15 32 32 H 0.96995 * 124.96100 * 359.73110 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4915 -4.9672 0.0001 12 6 1.1449 -5.5670 1.1971 13 6 0.4552 -6.7604 1.2011 14 6 0.1015 -7.3735 -0.0029 15 6 0.4536 -6.7641 -1.1968 16 6 1.1450 -5.5678 -1.1958 17 6 -0.0422 -7.6219 -2.3392 18 6 -0.7319 -8.8139 -1.6555 19 7 -0.5882 -8.5679 -0.2181 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8717 -3.6045 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 1.4148 -5.0984 2.1318 26 1 0.1872 -7.2233 2.1394 27 1 1.4145 -5.1005 -2.1313 28 1 -0.7565 -7.0681 -2.9486 29 1 0.7941 -7.9642 -2.9486 30 1 -0.2370 -9.7455 -1.9300 31 1 -1.7860 -8.8496 -1.9305 32 1 -0.9209 -9.1514 0.4816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259085709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:41 Heat of formation + Delta-G solvation = 13.284252 kcal Electronic energy + Delta-G solvation = -13694.634226 eV Core-core repulsion = 11426.031555 eV Total energy + Delta-G solvation = -2268.602671 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96248 -36.53241 -33.45002 -31.78888 -31.21463 -28.47821 -28.00716 -24.75015 -22.56508 -21.62078 -21.23064 -19.48170 -17.17745 -16.25697 -15.49516 -15.46714 -14.48688 -14.32870 -13.75461 -13.15229 -12.59072 -12.45582 -12.36819 -12.09711 -11.99949 -11.85864 -11.41816 -10.88240 -10.85833 -10.53150 -10.42294 -9.84496 -9.69464 -9.16311 -8.99027 -8.32996 -8.25932 -6.88482 -5.93004 -3.95879 1.86862 2.07697 3.37432 3.41532 3.44146 3.57556 4.27374 4.51721 4.77395 4.88244 5.12074 5.38094 5.42084 5.52705 5.60558 5.74777 5.89292 5.95514 6.03957 6.18396 6.32545 6.58952 6.76945 6.81293 6.92983 7.02515 7.20183 7.33792 7.62129 7.76923 7.94086 8.00600 8.08674 8.49214 9.11597 9.67643 11.17904 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.058609 B = 0.005513 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.630440 B = 5077.778784 C = 5206.002005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.072 4.072 11 C -0.103 4.103 12 C -0.077 4.077 13 C -0.178 4.178 14 C 0.171 3.829 15 C -0.173 4.173 16 C -0.063 4.063 17 C -0.083 4.083 18 C 0.123 3.877 19 N -0.755 5.755 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -16.461 -1.893 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.095 4.095 13 C -0.201 4.201 14 C 0.070 3.930 15 C -0.178 4.178 16 C -0.082 4.082 17 C -0.120 4.120 18 C -0.002 4.002 19 N -0.390 5.390 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.694 -16.426 -2.020 16.565 hybrid contribution 0.147 0.690 0.340 0.783 sum -0.548 -15.736 -1.680 15.835 Atomic orbital electron populations 1.69973 1.06052 1.26587 1.50869 1.25024 0.94819 0.99164 0.95422 0.86671 0.79576 0.83235 0.78589 1.20263 1.21348 1.20268 1.21261 0.93011 0.91124 1.50553 0.92706 1.19076 0.93761 0.90521 0.97424 1.20695 0.98072 0.91249 1.00891 1.20051 1.00840 0.97456 0.92154 1.20718 0.96916 0.93809 0.98069 1.20241 1.06493 0.98271 0.95059 1.18230 0.93265 0.87150 0.94321 1.19778 1.06390 0.97970 0.93650 1.20261 0.96868 0.92918 0.98124 1.20976 0.99954 0.94505 0.96545 1.21672 0.99685 0.97831 0.81009 1.44565 1.64383 1.23681 1.06364 0.93018 0.96537 0.96537 0.92562 0.92611 0.86097 0.87189 0.86454 0.90150 0.90323 0.92277 0.92174 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 10 C -0.07 -1.55 5.29 -27.88 -0.15 -1.70 16 11 C -0.10 -2.01 5.14 -104.60 -0.54 -2.54 16 12 C -0.08 -1.36 9.68 -39.71 -0.38 -1.75 16 13 C -0.18 -2.84 10.07 -39.20 -0.39 -3.24 16 14 C 0.17 2.67 7.03 -83.66 -0.59 2.08 16 15 C -0.17 -2.78 6.23 -104.26 -0.65 -3.43 16 16 C -0.06 -1.13 9.70 -39.61 -0.38 -1.52 16 17 C -0.08 -1.00 6.94 -27.24 -0.19 -1.19 16 18 C 0.12 1.27 7.96 -3.63 -0.03 1.24 16 19 N -0.76 -9.18 6.53 -58.12 -0.38 -9.56 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 24 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 25 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 27 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.41 3.96 8.96 -40.82 -0.37 3.59 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -31.86 272.44 -8.96 -40.83 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.55 Total: -0.32 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.85 Total: -25.20 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.36 Total: -36.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.86 -8.96 -40.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259085709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.111 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds