Wall clock time and date at job start Mon Mar 30 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47280 * 240.00073 * 3 2 1 5 5 H 1.48503 * 109.46680 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46730 * 119.99737 * 3 2 1 7 7 C 1.37875 * 119.99379 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.38301 * 120.08607 * 270.01943 * 11 10 9 13 13 C 1.37831 * 120.23030 * 179.97438 * 12 11 10 14 14 C 1.39669 * 120.28352 * 0.02562 * 13 12 11 15 15 C 1.38590 * 119.02716 * 359.97438 * 14 13 12 16 16 C 1.38171 * 120.47980 * 0.02562 * 15 14 13 17 17 C 1.51219 * 108.54310 * 180.02562 * 15 14 13 18 18 C 1.53751 * 104.53352 * 0.02562 * 17 15 14 19 19 N 1.39585 * 129.32081 * 179.97438 * 14 13 12 20 20 H 0.97001 * 119.99477 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46865 * 60.00852 * 9 7 2 22 22 H 1.08991 * 109.47396 * 299.99972 * 9 7 2 23 23 H 1.08997 * 109.47199 * 60.00037 * 10 9 7 24 24 H 1.09005 * 109.47023 * 300.00136 * 10 9 7 25 25 H 1.07991 * 119.88338 * 0.02562 * 12 11 10 26 26 H 1.08003 * 119.85499 * 180.02562 * 13 12 11 27 27 H 1.07996 * 119.92915 * 180.02562 * 16 15 14 28 28 H 1.09005 * 110.42398 * 118.76399 * 17 15 14 29 29 H 1.09000 * 110.42462 * 241.23533 * 17 15 14 30 30 H 1.09004 * 110.30130 * 241.07095 * 18 17 15 31 31 H 1.09003 * 110.30057 * 118.93013 * 18 17 15 32 32 H 0.96995 * 124.96100 * 359.73110 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4915 -4.9672 0.0001 12 6 1.1449 -5.5670 1.1971 13 6 0.4552 -6.7604 1.2011 14 6 0.1015 -7.3735 -0.0029 15 6 0.4536 -6.7641 -1.1968 16 6 1.1450 -5.5678 -1.1958 17 6 -0.0422 -7.6219 -2.3392 18 6 -0.7319 -8.8139 -1.6555 19 7 -0.5882 -8.5679 -0.2181 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8717 -3.6045 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 1.4148 -5.0984 2.1318 26 1 0.1872 -7.2233 2.1394 27 1 1.4145 -5.1005 -2.1313 28 1 -0.7565 -7.0681 -2.9486 29 1 0.7941 -7.9642 -2.9486 30 1 -0.2370 -9.7455 -1.9300 31 1 -1.7860 -8.8496 -1.9305 32 1 -0.9209 -9.1514 0.4816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259085709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:40 Heat of formation + Delta-G solvation = -5.846879 kcal Electronic energy + Delta-G solvation = -13695.463815 eV Core-core repulsion = 11426.031555 eV Total energy + Delta-G solvation = -2269.432259 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13851 -37.83773 -35.44776 -33.33971 -32.66337 -29.76072 -29.49305 -26.61430 -23.88917 -23.09441 -22.55681 -20.97207 -18.49884 -18.30116 -16.70304 -16.51786 -16.35025 -15.80857 -15.13411 -14.50039 -14.35510 -14.19747 -13.65233 -13.52432 -13.27909 -12.91588 -12.87063 -12.74866 -12.59808 -12.23148 -11.89906 -11.61922 -11.48754 -11.16140 -10.59818 -10.53160 -9.60064 -8.20116 -8.03491 -6.29586 0.56923 0.73520 1.41194 1.45097 1.52965 2.43026 2.59637 2.96759 3.15124 3.76881 3.85907 4.18934 4.27642 4.32289 4.49700 4.55538 4.71197 4.73169 4.86811 4.94048 5.04012 5.12796 5.23007 5.26993 5.48972 5.52360 5.61768 5.67240 5.83187 5.89116 6.03487 6.26149 6.38421 6.87645 7.06690 7.39683 8.94406 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.058609 B = 0.005513 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.630440 B = 5077.778784 C = 5206.002005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.038 3.962 10 C -0.056 4.056 11 C -0.137 4.137 12 C -0.088 4.088 13 C -0.183 4.183 14 C 0.173 3.827 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.084 4.084 18 C 0.121 3.879 19 N -0.745 5.745 20 H 0.263 0.737 21 H -0.014 1.014 22 H -0.013 1.013 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.123 0.877 26 H 0.135 0.865 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -17.822 -2.208 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.093 4.093 11 C -0.139 4.139 12 C -0.107 4.107 13 C -0.206 4.206 14 C 0.070 3.930 15 C -0.192 4.192 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.003 4.003 19 N -0.380 5.380 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.005 0.995 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.141 0.859 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.493 -17.836 -2.336 17.995 hybrid contribution 0.004 0.996 0.421 1.081 sum -0.489 -16.840 -1.915 16.956 Atomic orbital electron populations 1.70123 1.07959 1.27802 1.51683 1.26026 0.95753 1.03473 0.94645 0.85464 0.78228 0.77848 0.79279 1.19033 1.20839 1.19050 1.21715 0.93644 0.92291 1.50628 0.91923 1.18917 0.94056 0.92529 0.94459 1.20406 0.96980 0.90857 1.01089 1.19900 1.03085 0.97250 0.93656 1.20827 0.97492 0.94767 0.97586 1.20460 1.05920 0.97662 0.96555 1.18456 0.92532 0.88053 0.93958 1.20172 1.05650 0.97558 0.95836 1.20340 0.97594 0.94018 0.97546 1.21127 1.00781 0.94550 0.95700 1.21898 1.01015 0.97976 0.79408 1.44693 1.63059 1.22402 1.07863 0.92807 0.99528 0.99477 0.92222 0.92367 0.85911 0.84691 0.86614 0.89629 0.88694 0.89606 0.90266 0.74141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.11 4.95 29.85 0.15 2.26 16 10 C -0.06 -2.51 5.29 29.85 0.16 -2.36 16 11 C -0.14 -5.50 5.14 -19.85 -0.10 -5.60 16 12 C -0.09 -3.19 9.68 22.19 0.21 -2.97 16 13 C -0.18 -5.66 10.07 22.52 0.23 -5.44 16 14 C 0.17 5.08 7.03 38.34 0.27 5.35 16 15 C -0.19 -5.83 6.23 -19.63 -0.12 -5.95 16 16 C -0.08 -2.80 9.70 22.25 0.22 -2.58 16 17 C -0.08 -1.83 6.94 30.27 0.21 -1.62 16 18 C 0.12 2.03 7.96 86.63 0.69 2.72 16 19 N -0.75 -15.70 6.53 -337.78 -2.21 -17.90 16 20 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 21 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 22 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 23 H 0.06 2.57 8.09 -2.39 -0.02 2.55 16 24 H 0.06 2.51 8.09 -2.38 -0.02 2.50 16 25 H 0.12 4.23 8.06 -2.92 -0.02 4.20 16 26 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 27 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 6.68 8.96 -92.71 -0.83 5.85 16 Total: -1.00 -69.84 272.44 2.98 -66.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.27 Total: 10.20 kcal Atomic # 6 Polarization: -50.38 SS G_CDS: 2.60 Total: -47.77 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.92 Total: -76.53 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.84 2.98 -66.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259085709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.008 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds