Wall clock time and date at job start Mon Mar 30 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.34150 * 126.13660 * 214.79983 * 3 2 1 5 5 C 1.32895 * 109.05515 * 180.02562 * 4 3 2 6 6 C 1.40088 * 125.73630 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99766 * 180.02562 * 6 5 4 8 8 C 1.40215 * 120.00177 * 0.02562 * 6 5 4 9 9 N 1.30683 * 120.00311 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47191 * 180.02562 * 10 8 6 12 12 H 1.48508 * 109.47055 * 299.99786 * 10 8 6 13 13 H 1.48498 * 109.47283 * 59.99862 * 10 8 6 14 14 N 1.37112 * 108.52361 * 0.19546 * 5 4 3 15 15 C 1.35418 * 107.41744 * 359.68653 * 14 5 4 16 16 C 1.50726 * 124.42965 * 180.02562 * 15 14 5 17 17 C 1.53672 * 108.05669 * 344.02363 * 16 15 14 18 18 C 1.53152 * 109.02821 * 48.78884 * 17 16 15 19 19 C 1.46495 * 128.07284 * 179.89300 * 14 5 4 20 20 H 0.97001 * 119.99977 * 179.97438 * 9 8 6 21 21 H 1.08997 * 109.73378 * 104.24947 * 16 15 14 22 22 H 1.09005 * 109.72880 * 224.92721 * 16 15 14 23 23 H 1.08999 * 109.78954 * 288.81625 * 17 16 15 24 24 H 1.08999 * 109.47717 * 168.56941 * 17 16 15 25 25 H 1.09005 * 109.45003 * 170.34299 * 18 17 16 26 26 H 1.08995 * 109.44680 * 50.42505 * 18 17 16 27 27 H 1.09004 * 109.58465 * 282.44443 * 19 14 5 28 28 H 1.09005 * 109.58666 * 42.87093 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3587 0.8906 0.6183 5 6 4.6291 0.5710 0.3951 6 6 5.7449 1.2671 0.8777 7 1 6.7406 0.9240 0.6379 8 6 5.5691 2.4091 1.6720 9 7 4.3644 2.8245 1.9617 10 14 7.0571 3.3377 2.3149 11 1 6.6049 4.4983 3.1233 12 1 7.8764 2.4341 3.1621 13 1 7.8728 3.8184 1.1710 14 7 4.6641 -0.5518 -0.3911 15 6 3.3828 -0.9145 -0.6371 16 6 2.9788 -2.1056 -1.4677 17 6 4.2023 -2.5562 -2.2810 18 6 5.4104 -2.6662 -1.3461 19 6 5.8401 -1.2664 -0.8937 20 1 4.2429 3.6144 2.5115 21 1 2.6418 -2.9116 -0.8159 22 1 2.1767 -1.8235 -2.1498 23 1 4.4132 -1.8282 -3.0644 24 1 4.0012 -3.5280 -2.7318 25 1 6.2349 -3.1462 -1.8734 26 1 5.1415 -3.2624 -0.4743 27 1 6.2639 -0.7239 -1.7387 28 1 6.5833 -1.3502 -0.1007 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259323218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:34 Heat of formation + Delta-G solvation = 69.377210 kcal Electronic energy + Delta-G solvation = -14081.233415 eV Core-core repulsion = 11711.522773 eV Total energy + Delta-G solvation = -2369.710641 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66790 -35.99704 -35.42056 -33.37420 -31.96336 -29.43399 -28.11776 -25.53604 -23.29809 -22.10424 -20.71991 -18.45961 -17.34137 -16.59500 -15.10646 -14.73603 -14.45884 -13.76502 -13.62330 -13.48402 -13.01659 -12.84040 -12.31907 -12.05738 -11.74537 -11.43957 -11.38416 -10.99174 -10.74383 -10.70674 -10.58143 -10.41699 -10.18513 -9.26167 -8.19713 -8.13387 -7.20089 -6.50029 -4.43633 2.64955 3.05856 3.11871 3.13372 3.61929 3.87503 3.92935 4.09577 4.77796 4.95008 5.02805 5.10795 5.15045 5.47915 5.51870 5.73968 5.81992 5.95150 5.99788 6.13191 6.18238 6.24047 6.47583 6.76896 7.07428 7.35593 7.77392 7.89619 8.17849 8.53150 8.80917 9.03300 9.87214 10.42227 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.011101 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.543743 B = 2521.590780 C = 3474.730555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.330 3.670 3 C 0.047 3.953 4 N -0.482 5.482 5 C 0.383 3.617 6 C -0.460 4.460 7 H 0.082 0.918 8 C 0.082 3.918 9 N -0.739 5.739 10 Si 0.913 3.087 11 H -0.278 1.278 12 H -0.267 1.267 13 H -0.267 1.267 14 N -0.486 5.486 15 C -0.051 4.051 16 C -0.034 4.034 17 C -0.119 4.119 18 C -0.131 4.131 19 C 0.122 3.878 20 H 0.276 0.724 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -7.453 -5.128 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C 0.016 3.984 3 C -0.086 4.086 4 N -0.204 5.204 5 C 0.141 3.859 6 C -0.500 4.500 7 H 0.100 0.900 8 C -0.143 4.143 9 N -0.364 5.364 10 Si 0.738 3.262 11 H -0.203 1.203 12 H -0.192 1.192 13 H -0.191 1.191 14 N -0.174 5.174 15 C -0.173 4.173 16 C -0.073 4.073 17 C -0.157 4.157 18 C -0.169 4.169 19 C -0.001 4.001 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.163 -6.674 -4.592 9.108 hybrid contribution 1.464 -0.139 -0.102 1.474 sum 5.627 -6.813 -4.695 10.006 Atomic orbital electron populations 1.81063 1.11919 1.10808 1.11910 1.24576 0.91258 0.91267 0.91261 1.15852 0.85401 0.99434 1.07912 1.71802 0.98396 1.24149 1.26039 1.20041 0.92805 0.83393 0.89706 1.18101 0.90840 1.09870 1.31188 0.89991 1.25698 0.96732 0.96782 0.95063 1.69967 1.21840 1.19197 1.25379 0.86310 0.81452 0.79133 0.79346 1.20316 1.19155 1.19147 1.45096 1.04226 1.24880 1.43188 1.20349 0.84967 1.01826 1.10161 1.20022 0.97127 0.93841 0.96265 1.21636 0.94945 1.01150 0.97933 1.21853 0.98547 0.96393 1.00119 1.21514 0.87662 0.91735 0.99217 0.91311 0.91423 0.91224 0.91653 0.91675 0.90735 0.91251 0.91453 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.22 18.54 41.84 0.78 -10.44 15 2 C 0.33 7.84 15.73 -22.48 -0.35 7.49 15 3 C 0.05 1.17 6.87 -84.98 -0.58 0.58 15 4 N -0.48 -13.45 9.45 -10.49 -0.10 -13.55 15 5 C 0.38 9.95 7.44 -156.05 -1.16 8.79 15 6 C -0.46 -11.65 9.11 -38.15 -0.35 -12.00 15 7 H 0.08 1.87 7.69 -52.48 -0.40 1.47 15 8 C 0.08 2.05 5.50 -17.30 -0.10 1.95 15 9 N -0.74 -20.02 11.88 55.56 0.66 -19.36 15 10 Si 0.91 18.26 29.56 -169.99 -5.03 13.23 15 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 13 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 14 N -0.49 -10.49 3.16 -111.11 -0.35 -10.84 15 15 C -0.05 -1.09 6.65 -81.04 -0.54 -1.62 15 16 C -0.03 -0.55 6.12 -27.52 -0.17 -0.72 15 17 C -0.12 -1.54 5.98 -26.30 -0.16 -1.69 15 18 C -0.13 -1.67 5.92 -26.52 -0.16 -1.83 15 19 C 0.12 1.98 6.61 -3.91 -0.03 1.95 15 20 H 0.28 6.85 8.29 -40.82 -0.34 6.51 15 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.06 0.86 8.12 -51.93 -0.42 0.44 15 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.07 0.91 8.11 -51.93 -0.42 0.49 15 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.08 1.25 8.13 -51.93 -0.42 0.83 15 LS Contribution 250.89 15.07 3.78 3.78 Total: -1.00 -30.10 250.89 -6.76 -36.87 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -2.92 Total: -2.59 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.59 Total: 2.90 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.99 Total: -54.20 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.10 -6.76 -36.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259323218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.245 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds