Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.34150 * 126.13660 * 214.79983 * 3 2 1 5 5 C 1.32895 * 109.05515 * 180.02562 * 4 3 2 6 6 C 1.40088 * 125.73630 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99766 * 180.02562 * 6 5 4 8 8 C 1.40215 * 120.00177 * 0.02562 * 6 5 4 9 9 N 1.30683 * 120.00311 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47191 * 180.02562 * 10 8 6 12 12 H 1.48508 * 109.47055 * 299.99786 * 10 8 6 13 13 H 1.48498 * 109.47283 * 59.99862 * 10 8 6 14 14 N 1.37112 * 108.52361 * 0.19546 * 5 4 3 15 15 C 1.35418 * 107.41744 * 359.68653 * 14 5 4 16 16 C 1.50726 * 124.42965 * 180.02562 * 15 14 5 17 17 C 1.53672 * 108.05669 * 344.02363 * 16 15 14 18 18 C 1.53152 * 109.02821 * 48.78884 * 17 16 15 19 19 C 1.46495 * 128.07284 * 179.89300 * 14 5 4 20 20 H 0.97001 * 119.99977 * 179.97438 * 9 8 6 21 21 H 1.08997 * 109.73378 * 104.24947 * 16 15 14 22 22 H 1.09005 * 109.72880 * 224.92721 * 16 15 14 23 23 H 1.08999 * 109.78954 * 288.81625 * 17 16 15 24 24 H 1.08999 * 109.47717 * 168.56941 * 17 16 15 25 25 H 1.09005 * 109.45003 * 170.34299 * 18 17 16 26 26 H 1.08995 * 109.44680 * 50.42505 * 18 17 16 27 27 H 1.09004 * 109.58465 * 282.44443 * 19 14 5 28 28 H 1.09005 * 109.58666 * 42.87093 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3587 0.8906 0.6183 5 6 4.6291 0.5710 0.3951 6 6 5.7449 1.2671 0.8777 7 1 6.7406 0.9240 0.6379 8 6 5.5691 2.4091 1.6720 9 7 4.3644 2.8245 1.9617 10 14 7.0571 3.3377 2.3149 11 1 6.6049 4.4983 3.1233 12 1 7.8764 2.4341 3.1621 13 1 7.8728 3.8184 1.1710 14 7 4.6641 -0.5518 -0.3911 15 6 3.3828 -0.9145 -0.6371 16 6 2.9788 -2.1056 -1.4677 17 6 4.2023 -2.5562 -2.2810 18 6 5.4104 -2.6662 -1.3461 19 6 5.8401 -1.2664 -0.8937 20 1 4.2429 3.6144 2.5115 21 1 2.6418 -2.9116 -0.8159 22 1 2.1767 -1.8235 -2.1498 23 1 4.4132 -1.8282 -3.0644 24 1 4.0012 -3.5280 -2.7318 25 1 6.2349 -3.1462 -1.8734 26 1 5.1415 -3.2624 -0.4743 27 1 6.2639 -0.7239 -1.7387 28 1 6.5833 -1.3502 -0.1007 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259323218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = 51.316192 kcal Electronic energy + Delta-G solvation = -14082.016599 eV Core-core repulsion = 11711.522773 eV Total energy + Delta-G solvation = -2370.493826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39518 -37.52983 -37.09621 -35.19208 -33.50628 -31.01636 -29.77136 -27.27476 -24.68820 -23.62849 -22.40345 -19.86707 -19.02895 -18.46848 -16.66587 -16.39564 -16.03881 -15.20796 -14.93919 -14.86290 -14.55098 -14.33254 -13.97107 -13.84393 -13.52902 -13.09698 -12.94626 -12.48662 -12.40880 -12.00371 -11.80844 -11.70364 -11.54716 -11.03523 -9.99541 -9.96986 -9.04167 -8.33373 -6.33868 0.89223 1.46623 1.48072 1.61058 1.75737 2.10150 2.23959 2.46525 2.92517 3.32067 3.58530 3.85103 3.95636 3.98155 4.18261 4.55076 4.61338 4.74820 4.89179 4.97378 5.00631 5.10316 5.20501 5.27955 5.41447 5.53823 5.99935 6.17795 6.33052 6.68418 6.94976 7.22813 8.04207 8.61948 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.011101 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.543743 B = 2521.590780 C = 3474.730555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.333 3.667 3 C -0.013 4.013 4 N -0.533 5.533 5 C 0.351 3.649 6 C -0.485 4.485 7 H 0.100 0.900 8 C 0.033 3.967 9 N -0.795 5.795 10 Si 0.993 3.007 11 H -0.280 1.280 12 H -0.256 1.256 13 H -0.256 1.256 14 N -0.483 5.483 15 C -0.008 4.008 16 C -0.040 4.040 17 C -0.114 4.114 18 C -0.124 4.124 19 C 0.107 3.893 20 H 0.276 0.724 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 -9.443 -6.489 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C 0.020 3.980 3 C -0.143 4.143 4 N -0.256 5.256 5 C 0.105 3.895 6 C -0.525 4.525 7 H 0.118 0.882 8 C -0.187 4.187 9 N -0.421 5.421 10 Si 0.814 3.186 11 H -0.205 1.205 12 H -0.180 1.180 13 H -0.180 1.180 14 N -0.169 5.169 15 C -0.133 4.133 16 C -0.079 4.079 17 C -0.151 4.151 18 C -0.161 4.161 19 C -0.015 4.015 20 H 0.086 0.914 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.170 -8.705 -5.982 12.232 hybrid contribution 0.827 0.337 0.220 0.920 sum 6.997 -8.368 -5.762 12.336 Atomic orbital electron populations 1.81034 1.11790 1.11177 1.12560 1.24590 0.91224 0.91131 0.91059 1.16192 0.85873 1.01346 1.10918 1.71635 0.99980 1.26242 1.27753 1.20316 0.92618 0.85221 0.91310 1.18563 0.91507 1.10550 1.31866 0.88229 1.26758 0.99706 0.97434 0.94757 1.70140 1.24676 1.20157 1.27130 0.85099 0.77272 0.77425 0.78820 1.20517 1.17982 1.18003 1.45467 1.05927 1.23863 1.41626 1.21232 0.84355 1.01066 1.06606 1.20325 0.99223 0.91896 0.96406 1.21665 0.93063 1.03071 0.97319 1.21889 0.99941 0.93848 1.00432 1.22015 0.86036 0.93616 0.99785 0.91408 0.89671 0.90399 0.91728 0.87820 0.86603 0.91410 0.90142 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.19 18.54 19.00 0.35 -22.84 15 2 C 0.33 16.21 15.73 88.33 1.39 17.60 15 3 C -0.01 -0.64 6.87 40.00 0.27 -0.36 15 4 N -0.53 -31.00 9.45 -187.10 -1.77 -32.77 15 5 C 0.35 18.63 7.44 133.78 0.99 19.62 15 6 C -0.49 -24.92 9.11 23.20 0.21 -24.70 15 7 H 0.10 4.51 7.69 -2.91 -0.02 4.49 15 8 C 0.03 1.67 5.50 85.34 0.47 2.14 15 9 N -0.79 -45.01 11.88 21.87 0.26 -44.75 15 10 Si 0.99 37.78 29.56 68.60 2.03 39.81 15 11 H -0.28 -10.58 7.11 99.48 0.71 -9.87 15 12 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 13 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 14 N -0.48 -20.44 3.16 -505.44 -1.60 -22.04 15 15 C -0.01 -0.34 6.65 41.98 0.28 -0.06 15 16 C -0.04 -1.17 6.12 30.08 0.18 -0.98 15 17 C -0.11 -2.38 5.98 30.87 0.18 -2.20 15 18 C -0.12 -2.57 5.92 30.73 0.18 -2.38 15 19 C 0.11 3.16 6.61 86.46 0.57 3.73 15 20 H 0.28 14.41 8.29 -92.71 -0.77 13.64 15 21 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.06 1.41 8.12 -2.39 -0.02 1.39 15 24 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.12 1.56 8.14 -2.38 -0.02 1.54 15 26 H 0.07 1.47 8.11 -2.39 -0.02 1.46 15 27 H 0.08 2.19 8.14 -2.39 -0.02 2.18 15 28 H 0.09 2.46 8.13 -2.38 -0.02 2.44 15 Total: -1.00 -69.15 250.89 5.19 -63.96 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.17 Total: 6.23 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.74 Total: 12.40 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -2.75 Total: -122.40 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -69.15 5.19 -63.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259323218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.274 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds