Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36438 * 124.89948 * 2 1 4 4 C 1.34459 * 109.19866 * 180.26762 * 3 2 1 5 5 C 1.46673 * 106.58648 * 0.02562 * 4 3 2 6 6 C 1.47034 * 127.00080 * 179.97438 * 5 4 3 7 7 N 1.36319 * 126.68047 * 225.04768 * 6 5 4 8 8 H 0.97001 * 125.79190 * 359.94661 * 7 6 5 9 9 N 1.39856 * 108.40413 * 179.97438 * 7 6 5 10 10 C 1.30200 * 109.68598 * 0.02562 * 9 7 6 11 11 C 1.40930 * 126.68118 * 44.73657 * 6 5 4 12 12 C 1.40939 * 126.62602 * 0.03489 * 11 6 5 13 13 H 1.08003 * 120.00138 * 359.97438 * 12 11 6 14 14 C 1.39676 * 120.00012 * 180.02562 * 12 11 6 15 15 N 1.31072 * 120.00130 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99787 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47249 * 59.99777 * 16 14 12 18 18 H 1.48498 * 109.46835 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46740 * 299.99293 * 16 14 12 20 20 C 1.35655 * 124.90010 * 180.31031 * 2 1 3 21 21 H 1.08997 * 109.46879 * 269.69212 * 1 2 3 22 22 H 1.09005 * 109.46941 * 29.69122 * 1 2 3 23 23 H 1.08999 * 109.46841 * 149.69197 * 1 2 3 24 24 H 1.08004 * 125.40020 * 0.23453 * 3 2 1 25 25 H 1.08003 * 126.70706 * 179.97438 * 4 3 2 26 26 H 1.08000 * 125.73576 * 180.02562 * 10 9 7 27 27 H 0.97002 * 119.99996 * 179.97438 * 15 14 12 28 28 H 1.07999 * 125.99151 * 359.76290 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2457 1.1190 0.0000 4 6 3.5401 0.7552 -0.0059 5 6 3.5627 -0.7114 -0.0106 6 6 4.7505 -1.5780 -0.0182 7 7 4.9498 -2.6795 -0.7961 8 1 4.3256 -3.0337 -1.4487 9 7 6.2068 -3.2126 -0.4930 10 6 6.7785 -2.4915 0.4281 11 6 5.9071 -1.4281 0.7730 12 6 6.1490 -0.4181 1.7258 13 1 5.4047 0.3434 1.9064 14 6 7.3517 -0.4014 2.4358 15 7 8.2552 -1.3252 2.2163 16 14 7.6719 0.9369 3.6992 17 1 6.6315 0.8780 4.7572 18 1 9.0105 0.7321 4.3086 19 1 7.6286 2.2646 3.0355 20 6 2.2412 -1.1126 -0.0060 21 1 -0.3633 -0.0055 1.0276 22 1 -0.3633 0.8928 -0.5091 23 1 -0.3633 -0.8872 -0.5186 24 1 1.8816 2.1358 0.0036 25 1 4.3959 1.4140 -0.0078 26 1 7.7547 -2.6705 0.8540 27 1 9.0906 -1.3134 2.7092 28 1 1.8877 -2.1330 -0.0079 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259711253.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = 94.227297 kcal Electronic energy + Delta-G solvation = -13811.468201 eV Core-core repulsion = 11442.835140 eV Total energy + Delta-G solvation = -2368.633061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59663 -40.61158 -35.35424 -33.74546 -31.62646 -31.00055 -29.30768 -27.23636 -26.07817 -22.51863 -21.75760 -20.56807 -20.47700 -18.97875 -17.65538 -16.58559 -16.40682 -15.88783 -14.92954 -14.74774 -14.59138 -14.28159 -13.66738 -13.32450 -13.16049 -12.89779 -12.87544 -12.81232 -12.59672 -12.21570 -11.80497 -11.14470 -10.82296 -9.98338 -9.34924 -9.11036 -8.55897 -8.31659 -5.87866 1.02131 1.46157 1.49902 1.57944 1.66389 2.20983 2.27295 2.37319 2.46844 2.78219 3.65006 4.15450 4.25142 4.35623 4.55650 4.72269 4.78665 4.86065 4.93858 5.28901 5.37681 5.38944 5.72425 5.78313 6.13135 6.19372 6.41199 6.68193 6.69725 7.02880 7.22856 7.24095 7.59154 8.68359 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.010152 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.257489 B = 2757.393104 C = 3640.081716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.452 5.452 3 C -0.005 4.005 4 C -0.210 4.210 5 C -0.104 4.104 6 C -0.013 4.013 7 N -0.487 5.487 8 H 0.429 0.571 9 N -0.348 5.348 10 C -0.001 4.001 11 C -0.046 4.046 12 C -0.450 4.450 13 H 0.069 0.931 14 C 0.018 3.982 15 N -0.868 5.868 16 Si 0.985 3.015 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.264 1.264 20 C -0.021 4.021 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.196 0.804 25 H 0.120 0.880 26 H 0.191 0.809 27 H 0.279 0.721 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 4.993 -2.008 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.128 5.128 3 C -0.134 4.134 4 C -0.236 4.236 5 C -0.113 4.113 6 C -0.138 4.138 7 N -0.202 5.202 8 H 0.272 0.728 9 N -0.172 5.172 10 C -0.186 4.186 11 C -0.055 4.055 12 C -0.484 4.484 13 H 0.087 0.913 14 C -0.189 4.189 15 N -0.500 5.500 16 Si 0.808 3.192 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.189 1.189 20 C -0.152 4.152 21 H 0.097 0.903 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.212 0.788 25 H 0.138 0.862 26 H 0.207 0.793 27 H 0.089 0.911 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.941 3.953 -2.626 14.727 hybrid contribution 0.334 0.750 0.715 1.089 sum -13.607 4.703 -1.911 14.523 Atomic orbital electron populations 1.22293 0.74709 1.05855 1.04177 1.43797 1.07625 1.04741 1.56675 1.21942 0.89519 0.92401 1.09519 1.21996 0.96648 0.93506 1.11414 1.18728 0.89445 0.92365 1.10742 1.19166 0.97560 0.94595 1.02430 1.45675 1.15044 1.23903 1.35565 0.72847 1.76273 0.94865 1.24882 1.21227 1.24852 1.01852 0.95277 0.96660 1.18491 0.91616 0.97073 0.98362 1.18850 1.01619 1.09856 1.18039 0.91266 1.26546 0.94932 0.98506 0.98936 1.69562 1.07641 1.33397 1.39419 0.85192 0.77741 0.78377 0.77880 1.19190 1.19730 1.18864 1.22253 0.89275 0.92115 1.11579 0.90272 0.87775 0.88740 0.78751 0.86188 0.79318 0.91073 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 11.05 127.77 1.41 2.42 15 2 N -0.45 -12.13 3.11 -545.76 -1.70 -13.83 15 3 C -0.01 -0.15 11.32 83.11 0.94 0.79 15 4 C -0.21 -8.39 10.17 23.61 0.24 -8.15 15 5 C -0.10 -4.52 6.03 -18.80 -0.11 -4.63 15 6 C -0.01 -0.69 7.23 41.41 0.30 -0.39 15 7 N -0.49 -23.29 7.38 -46.70 -0.34 -23.64 15 8 H 0.43 16.72 8.96 -213.48 -1.91 14.81 15 9 N -0.35 -18.72 12.57 -56.09 -0.71 -19.43 15 10 C 0.00 -0.06 10.88 85.80 0.93 0.88 15 11 C -0.05 -2.66 5.96 -21.09 -0.13 -2.79 15 12 C -0.45 -25.98 9.08 23.28 0.21 -25.77 15 13 H 0.07 3.91 6.96 -2.91 -0.02 3.89 15 14 C 0.02 0.98 5.49 85.15 0.47 1.44 15 15 N -0.87 -48.29 10.31 21.79 0.22 -48.07 15 16 Si 0.99 41.75 29.56 68.60 2.03 43.78 15 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 15 20 C -0.02 -0.70 11.44 84.07 0.96 0.27 15 21 H 0.08 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.10 1.01 8.13 -2.38 -0.02 0.99 15 23 H 0.09 1.08 8.13 -2.39 -0.02 1.06 15 24 H 0.20 3.98 8.06 -2.91 -0.02 3.96 15 25 H 0.12 5.10 8.06 -2.91 -0.02 5.07 15 26 H 0.19 11.30 5.74 -2.91 -0.02 11.29 15 27 H 0.28 14.22 8.30 -92.71 -0.77 13.45 15 28 H 0.17 5.00 8.06 -2.91 -0.02 4.98 15 Total: -1.00 -71.36 251.44 4.00 -67.36 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.73 Total: 29.77 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 5.23 Total: -35.94 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -2.52 Total: -104.96 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -71.36 4.00 -67.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259711253.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.586 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds