Wall clock time and date at job start Mon Mar 30 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35086 * 126.29853 * 2 1 4 4 N 1.30388 * 109.00155 * 179.74113 * 3 2 1 5 5 C 1.34815 * 109.20823 * 0.38399 * 4 3 2 6 6 C 1.48456 * 126.14352 * 179.88519 * 5 4 3 7 7 C 1.38234 * 126.20693 * 184.70918 * 6 5 4 8 8 N 1.35995 * 108.69438 * 179.97438 * 7 6 5 9 9 H 0.96995 * 125.56780 * 179.97438 * 8 7 6 10 10 C 1.38047 * 108.85298 * 0.02562 * 8 7 6 11 11 C 1.39992 * 126.09559 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00032 * 180.02562 * 11 10 8 13 13 C 1.39976 * 119.99872 * 0.02562 * 11 10 8 14 14 N 1.30906 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99906 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47188 * 89.99887 * 15 13 11 17 17 H 1.48499 * 109.47423 * 209.99852 * 15 13 11 18 18 H 1.48505 * 109.47109 * 329.99735 * 15 13 11 19 19 C 1.39457 * 107.81133 * 359.97438 * 10 8 7 20 20 C 1.35861 * 107.71338 * 359.61464 * 5 4 3 21 21 H 1.08994 * 109.47151 * 270.03225 * 1 2 3 22 22 H 1.09006 * 109.46900 * 30.03001 * 1 2 3 23 23 H 1.08993 * 109.47231 * 150.02412 * 1 2 3 24 24 H 1.08004 * 125.50531 * 359.97259 * 3 2 1 25 25 H 1.07998 * 125.64980 * 0.24629 * 7 6 5 26 26 H 0.96995 * 119.99917 * 180.02562 * 14 13 11 27 27 H 1.08001 * 126.47076 * 180.02562 * 19 10 8 28 28 H 1.08001 * 126.67039 * 180.24742 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2647 1.0887 0.0000 4 7 3.5096 0.7010 0.0056 5 6 3.5546 -0.6463 0.0008 6 6 4.7820 -1.4815 0.0022 7 6 4.8321 -2.8595 -0.0942 8 7 6.1337 -3.2520 -0.0579 9 1 6.4484 -4.1681 -0.1077 10 6 6.9337 -2.1334 0.0626 11 6 8.3318 -2.1231 0.1333 12 1 8.8609 -1.1862 0.2276 13 6 9.0441 -3.3270 0.0818 14 7 8.4028 -4.4625 -0.0320 15 14 10.9096 -3.3133 0.1768 16 1 11.3337 -3.4109 1.5967 17 1 11.4525 -4.4683 -0.5824 18 1 11.4258 -2.0497 -0.4082 19 6 6.1009 -1.0155 0.1014 20 6 2.2750 -1.1027 0.0006 21 1 -0.3633 0.0006 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8901 -0.5134 24 1 1.9275 2.1148 -0.0004 25 1 3.9792 -3.5154 -0.1877 26 1 8.8964 -5.2968 -0.0673 27 1 6.4128 0.0146 0.1907 28 1 1.9584 -2.1352 0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:59 Heat of formation + Delta-G solvation = 70.076852 kcal Electronic energy + Delta-G solvation = -13488.955503 eV Core-core repulsion = 11119.275200 eV Total energy + Delta-G solvation = -2369.680303 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.67332 -40.65493 -35.45148 -34.74736 -31.77307 -30.82692 -29.35725 -27.41998 -26.13758 -22.75014 -22.02969 -20.80497 -20.02470 -19.37054 -17.41388 -17.27782 -16.37525 -16.17332 -15.01922 -14.74764 -14.40456 -14.35363 -13.86128 -13.77507 -13.56816 -13.29280 -12.87868 -12.67276 -12.59376 -12.22221 -11.79205 -11.22808 -10.69344 -10.50178 -9.90529 -8.97718 -8.73346 -8.25422 -6.17983 1.11478 1.31503 1.40530 1.55246 1.86088 2.09686 2.13426 2.24481 3.06576 3.35293 3.47632 3.92964 4.09819 4.20886 4.55592 4.66861 4.79379 4.80091 4.85515 5.21977 5.35069 5.44237 5.56407 5.88069 5.96948 6.13570 6.31953 6.55371 6.80560 6.97011 7.20011 7.41286 7.77764 8.37268 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.086261 B = 0.005927 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.517156 B = 4723.029132 C = 5031.092913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.463 5.463 3 C 0.178 3.822 4 N -0.546 5.546 5 C 0.058 3.942 6 C -0.094 4.094 7 C -0.102 4.102 8 N -0.550 5.550 9 H 0.421 0.579 10 C 0.190 3.810 11 C -0.485 4.485 12 H 0.082 0.918 13 C 0.025 3.975 14 N -0.877 5.877 15 Si 1.004 2.996 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.263 1.263 19 C -0.342 4.342 20 C -0.061 4.061 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.096 0.904 24 H 0.242 0.758 25 H 0.171 0.829 26 H 0.294 0.706 27 H 0.088 0.912 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 2.469 -0.204 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.147 5.147 3 C -0.105 4.105 4 N -0.265 5.265 5 C -0.069 4.069 6 C -0.103 4.103 7 C -0.232 4.232 8 N -0.157 5.157 9 H 0.268 0.732 10 C 0.075 3.925 11 C -0.520 4.520 12 H 0.100 0.900 13 C -0.184 4.184 14 N -0.510 5.510 15 Si 0.825 3.175 16 H -0.188 1.188 17 H -0.189 1.189 18 H -0.187 1.187 19 C -0.365 4.365 20 C -0.194 4.194 21 H 0.106 0.894 22 H 0.129 0.871 23 H 0.115 0.885 24 H 0.258 0.742 25 H 0.188 0.812 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.751 2.581 -0.229 13.012 hybrid contribution 0.326 -0.782 0.041 0.848 sum -12.426 1.800 -0.188 12.557 Atomic orbital electron populations 1.22353 0.73531 1.06365 1.04799 1.45521 1.09135 1.05633 1.54374 1.25639 0.84728 0.95220 1.04918 1.70201 1.21829 1.12674 1.21841 1.18878 0.91914 0.89405 1.06718 1.17441 0.90470 0.91441 1.10925 1.21958 0.87373 0.94053 1.19798 1.42780 1.04851 1.09789 1.58281 0.73209 1.18298 0.91483 0.84978 0.97786 1.19032 0.90060 0.94996 1.47940 0.89983 1.26773 1.06876 0.93551 0.91178 1.68807 1.40118 0.99645 1.42472 0.84845 0.74536 0.78902 0.79217 1.18828 1.18894 1.18717 1.20670 0.92938 0.95355 1.27534 1.22726 0.89680 0.93714 1.13263 0.89411 0.87093 0.88539 0.74180 0.81210 0.89450 0.89393 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.17 127.77 1.43 2.27 15 2 N -0.46 -11.95 3.15 -551.57 -1.74 -13.68 15 3 C 0.18 5.36 12.54 180.28 2.26 7.62 15 4 N -0.55 -23.93 11.27 -189.23 -2.13 -26.06 15 5 C 0.06 2.64 7.00 40.86 0.29 2.93 15 6 C -0.09 -5.01 6.12 -20.07 -0.12 -5.14 15 7 C -0.10 -5.02 11.71 84.05 0.98 -4.03 15 8 N -0.55 -30.11 5.75 -185.29 -1.06 -31.17 15 9 H 0.42 22.32 6.22 -92.71 -0.58 21.74 15 10 C 0.19 11.41 6.69 38.88 0.26 11.67 15 11 C -0.49 -28.34 9.32 23.12 0.22 -28.12 15 12 H 0.08 4.70 7.85 -2.91 -0.02 4.68 15 13 C 0.02 1.28 5.50 85.25 0.47 1.75 15 14 N -0.88 -45.50 10.66 21.84 0.23 -45.27 15 15 Si 1.00 40.15 29.56 68.60 2.03 42.17 15 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 18 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 19 C -0.34 -20.48 10.84 23.05 0.25 -20.23 15 20 C -0.06 -2.05 11.30 83.36 0.94 -1.11 15 21 H 0.09 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.11 0.75 8.14 -2.38 -0.02 0.73 15 23 H 0.10 0.92 8.14 -2.39 -0.02 0.90 15 24 H 0.24 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.17 6.72 8.06 -2.91 -0.02 6.69 15 26 H 0.29 13.68 8.30 -92.71 -0.77 12.92 15 27 H 0.09 5.41 8.06 -2.91 -0.02 5.38 15 28 H 0.19 5.29 8.06 -2.91 -0.02 5.26 15 Total: -1.00 -75.98 252.92 4.90 -71.08 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.60 Total: 35.33 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 6.97 Total: -32.40 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.70 Total: -116.18 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -75.98 4.90 -71.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.159 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds