Wall clock time and date at job start Mon Mar 30 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39907 * 125.81173 * 2 1 4 4 C 1.35346 * 107.96725 * 179.76709 * 3 2 1 5 5 N 1.35818 * 107.61703 * 0.37080 * 4 3 2 6 6 C 1.39625 * 126.10557 * 179.89620 * 5 4 3 7 7 C 1.35105 * 125.36851 * 179.71481 * 6 5 4 8 8 C 1.46803 * 106.56498 * 179.97438 * 7 6 5 9 9 C 1.41336 * 127.03251 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99642 * 359.97438 * 9 8 7 11 11 C 1.39606 * 120.00048 * 179.97438 * 9 8 7 12 12 N 1.31085 * 120.00251 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46979 * 59.99484 * 13 11 9 15 15 H 1.48494 * 109.47447 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46912 * 299.99861 * 13 11 9 17 17 C 1.39399 * 105.93243 * 359.97438 * 8 7 6 18 18 N 1.35603 * 107.97218 * 359.77104 * 17 8 7 19 19 H 0.97006 * 124.86622 * 180.25761 * 18 17 8 20 20 N 1.30879 * 125.82154 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47073 * 270.02172 * 1 2 3 22 22 H 1.08997 * 109.47062 * 30.02401 * 1 2 3 23 23 H 1.09004 * 109.46831 * 150.02429 * 1 2 3 24 24 H 1.07998 * 126.01816 * 0.02562 * 3 2 1 25 25 H 1.08005 * 126.19626 * 180.25391 * 4 3 2 26 26 H 1.07993 * 126.71611 * 359.95300 * 7 6 5 27 27 H 0.96998 * 120.00471 * 180.02562 * 12 11 9 28 28 H 1.08001 * 126.01039 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3256 1.1346 0.0000 4 6 3.6140 0.7198 0.0052 5 7 3.6086 -0.6383 0.0001 6 6 4.7334 -1.4656 0.0008 7 6 4.7107 -2.8164 0.0011 8 6 6.1106 -3.2586 0.0013 9 6 6.5824 -4.5908 0.0021 10 1 5.8810 -5.4121 0.0031 11 6 7.9551 -4.8452 0.0017 12 7 8.8065 -3.8484 0.0000 13 14 8.5788 -6.6060 0.0020 14 1 8.0836 -7.3068 -1.2100 15 1 10.0638 -6.6052 0.0008 16 1 8.0847 -7.3059 1.2150 17 6 6.8792 -2.0956 0.0005 18 7 6.0338 -1.0354 -0.0053 19 1 6.3104 -0.1056 -0.0106 20 7 2.2730 -1.0612 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.9889 2.1607 0.0004 25 1 4.4882 1.3540 0.0105 26 1 3.8343 -3.4474 0.0015 27 1 9.7602 -4.0250 -0.0007 28 1 7.9581 -2.0476 0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:43 Heat of formation + Delta-G solvation = 117.939321 kcal Electronic energy + Delta-G solvation = -13545.842614 eV Core-core repulsion = 11178.237783 eV Total energy + Delta-G solvation = -2367.604830 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99112 -38.96901 -33.67773 -32.76651 -30.26273 -29.49026 -28.63027 -26.34426 -24.42665 -21.42983 -20.12826 -19.42282 -18.55808 -18.09029 -15.84529 -15.04441 -14.96513 -14.27280 -13.86782 -13.22238 -13.16788 -12.72136 -12.55985 -12.19385 -11.98335 -11.86702 -11.13596 -11.12150 -10.92020 -10.26601 -9.96484 -9.67309 -9.42502 -9.13666 -8.64365 -7.47498 -6.45099 -6.43048 -4.03727 1.95101 2.74668 3.01534 3.14311 3.20480 3.24959 3.79948 4.14248 4.25402 4.50109 4.91941 5.02228 5.45005 5.60670 5.70778 5.76332 5.95152 6.00135 6.21677 6.76669 6.83701 6.99454 7.08748 7.31153 7.38177 7.75758 8.01115 8.11958 8.35156 8.73614 9.00320 9.19142 9.21715 10.57051 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.069284 B = 0.006232 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.035534 B = 4491.896600 C = 4880.784803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.048 3.952 3 C -0.273 4.273 4 C 0.029 3.971 5 N -0.268 5.268 6 C 0.186 3.814 7 C -0.208 4.208 8 C 0.022 3.978 9 C -0.426 4.426 10 H 0.070 0.930 11 C 0.058 3.942 12 N -0.843 5.843 13 Si 0.917 3.083 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.270 1.270 17 C -0.085 4.085 18 N -0.574 5.574 19 H 0.391 0.609 20 N -0.272 5.272 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.144 0.856 25 H 0.165 0.835 26 H 0.124 0.876 27 H 0.272 0.728 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 8.094 0.010 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C -0.303 4.303 4 C -0.116 4.116 5 N -0.042 5.042 6 C -0.014 4.014 7 C -0.240 4.240 8 C 0.016 3.984 9 C -0.460 4.460 10 H 0.088 0.912 11 C -0.151 4.151 12 N -0.475 5.475 13 Si 0.743 3.257 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.195 1.195 17 C -0.213 4.213 18 N -0.177 5.177 19 H 0.224 0.776 20 N -0.096 5.096 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.162 0.838 25 H 0.183 0.817 26 H 0.142 0.858 27 H 0.083 0.917 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.567 6.858 0.003 9.496 hybrid contribution 0.558 0.734 0.008 0.922 sum -6.010 7.592 0.011 9.683 Atomic orbital electron populations 1.20086 0.86773 1.02917 1.02586 1.22382 0.96912 0.90929 1.01433 1.21178 0.91401 0.99395 1.18347 1.22594 0.99624 0.85000 1.04419 1.45170 1.03975 1.03282 1.51800 1.16369 0.76912 0.88598 1.19477 1.21551 0.97900 0.89746 1.14813 1.18300 0.87889 0.92958 0.99266 1.18717 0.91337 0.91506 1.44425 0.91162 1.25596 0.96680 0.98676 0.94144 1.69419 1.03014 1.31880 1.43217 0.86229 0.77424 0.82691 0.79362 1.19538 1.20830 1.19533 1.23564 0.95626 0.83425 1.18648 1.41409 1.02832 1.08515 1.64905 0.77628 1.77481 0.84854 1.22201 1.25065 0.90877 0.90791 0.91077 0.83804 0.81724 0.85850 0.91711 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.44 36.01 0.38 -0.37 15 2 C 0.05 0.80 7.21 -82.37 -0.59 0.20 15 3 C -0.27 -4.15 10.73 -39.99 -0.43 -4.58 15 4 C 0.03 0.49 11.25 -16.82 -0.19 0.30 15 5 N -0.27 -5.60 3.80 -12.00 -0.05 -5.64 15 6 C 0.19 4.32 7.78 -151.81 -1.18 3.14 15 7 C -0.21 -5.38 10.87 -37.23 -0.40 -5.79 15 8 C 0.02 0.59 6.11 -104.82 -0.64 -0.05 15 9 C -0.43 -11.86 9.44 -37.89 -0.36 -12.22 15 10 H 0.07 1.90 7.84 -52.48 -0.41 1.48 15 11 C 0.06 1.52 5.49 -17.36 -0.10 1.42 15 12 N -0.84 -22.16 10.37 55.53 0.58 -21.59 15 13 Si 0.92 19.92 29.56 -169.99 -5.02 14.90 15 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 16 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 17 C -0.09 -2.16 10.96 -15.45 -0.17 -2.33 15 18 N -0.57 -12.47 5.87 -11.09 -0.07 -12.54 15 19 H 0.39 6.84 8.59 -40.82 -0.35 6.49 15 20 N -0.27 -5.59 12.35 33.68 0.42 -5.17 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.14 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.17 2.17 7.84 -52.48 -0.41 1.76 15 26 H 0.12 3.13 8.06 -52.49 -0.42 2.70 15 27 H 0.27 6.62 8.30 -40.82 -0.34 6.28 15 28 H 0.20 5.05 5.77 -52.49 -0.30 4.74 15 LS Contribution 252.44 15.07 3.80 3.80 Total: -1.00 -30.52 252.44 -6.75 -37.27 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.72 Total: 9.23 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.69 Total: -20.26 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.88 Total: -44.94 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.52 -6.75 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.207 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds