Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39907 * 125.81173 * 2 1 4 4 C 1.35346 * 107.96725 * 179.76709 * 3 2 1 5 5 N 1.35818 * 107.61703 * 0.37080 * 4 3 2 6 6 C 1.39625 * 126.10557 * 179.89620 * 5 4 3 7 7 C 1.35105 * 125.36851 * 179.71481 * 6 5 4 8 8 C 1.46803 * 106.56498 * 179.97438 * 7 6 5 9 9 C 1.41336 * 127.03251 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99642 * 359.97438 * 9 8 7 11 11 C 1.39606 * 120.00048 * 179.97438 * 9 8 7 12 12 N 1.31085 * 120.00251 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46979 * 59.99484 * 13 11 9 15 15 H 1.48494 * 109.47447 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46912 * 299.99861 * 13 11 9 17 17 C 1.39399 * 105.93243 * 359.97438 * 8 7 6 18 18 N 1.35603 * 107.97218 * 359.77104 * 17 8 7 19 19 H 0.97006 * 124.86622 * 180.25761 * 18 17 8 20 20 N 1.30879 * 125.82154 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47073 * 270.02172 * 1 2 3 22 22 H 1.08997 * 109.47062 * 30.02401 * 1 2 3 23 23 H 1.09004 * 109.46831 * 150.02429 * 1 2 3 24 24 H 1.07998 * 126.01816 * 0.02562 * 3 2 1 25 25 H 1.08005 * 126.19626 * 180.25391 * 4 3 2 26 26 H 1.07993 * 126.71611 * 359.95300 * 7 6 5 27 27 H 0.96998 * 120.00471 * 180.02562 * 12 11 9 28 28 H 1.08001 * 126.01039 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3256 1.1346 0.0000 4 6 3.6140 0.7198 0.0052 5 7 3.6086 -0.6383 0.0001 6 6 4.7334 -1.4656 0.0008 7 6 4.7107 -2.8164 0.0011 8 6 6.1106 -3.2586 0.0013 9 6 6.5824 -4.5908 0.0021 10 1 5.8810 -5.4121 0.0031 11 6 7.9551 -4.8452 0.0017 12 7 8.8065 -3.8484 0.0000 13 14 8.5788 -6.6060 0.0020 14 1 8.0836 -7.3068 -1.2100 15 1 10.0638 -6.6052 0.0008 16 1 8.0847 -7.3059 1.2150 17 6 6.8792 -2.0956 0.0005 18 7 6.0338 -1.0354 -0.0053 19 1 6.3104 -0.1056 -0.0106 20 7 2.2730 -1.0612 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.9889 2.1607 0.0004 25 1 4.4882 1.3540 0.0105 26 1 3.8343 -3.4474 0.0015 27 1 9.7602 -4.0250 -0.0007 28 1 7.9581 -2.0476 0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = 99.587922 kcal Electronic energy + Delta-G solvation = -13546.638390 eV Core-core repulsion = 11178.237783 eV Total energy + Delta-G solvation = -2368.400607 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.43600 -40.74492 -35.54700 -34.24434 -31.92591 -31.12257 -29.97670 -28.08872 -26.24955 -22.87793 -21.68326 -21.26930 -20.09845 -19.76241 -17.85834 -16.77685 -16.42163 -15.85141 -15.20203 -14.70006 -14.60442 -14.42041 -13.88030 -13.64787 -13.51334 -13.13850 -12.95034 -12.87616 -12.69617 -11.78964 -11.70008 -11.57556 -11.24142 -10.69121 -10.01778 -9.41898 -8.38909 -8.27749 -6.08352 0.50047 1.20939 1.41081 1.43794 1.55048 1.79414 2.01716 2.30163 2.33068 2.89013 3.54975 3.67230 3.85922 4.33752 4.67992 4.75821 4.86876 4.88093 4.94792 5.04936 5.16850 5.25257 5.37744 5.58541 5.78578 5.92039 6.10962 6.35167 6.67448 6.89394 7.11186 7.19031 7.29050 8.61781 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.069284 B = 0.006232 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.035534 B = 4491.896600 C = 4880.784803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.054 3.946 3 C -0.260 4.260 4 C 0.025 3.975 5 N -0.304 5.304 6 C 0.218 3.782 7 C -0.257 4.257 8 C -0.013 4.013 9 C -0.469 4.469 10 H 0.060 0.940 11 C 0.018 3.982 12 N -0.861 5.861 13 Si 0.987 3.013 14 H -0.268 1.268 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.099 4.099 18 N -0.555 5.555 19 H 0.413 0.587 20 N -0.327 5.327 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.189 0.811 25 H 0.199 0.801 26 H 0.111 0.889 27 H 0.280 0.720 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 10.034 0.019 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C -0.288 4.288 4 C -0.118 4.118 5 N -0.080 5.080 6 C 0.016 3.984 7 C -0.288 4.288 8 C -0.019 4.019 9 C -0.502 4.502 10 H 0.079 0.921 11 C -0.189 4.189 12 N -0.492 5.492 13 Si 0.810 3.190 14 H -0.193 1.193 15 H -0.192 1.192 16 H -0.192 1.192 17 C -0.227 4.227 18 N -0.159 5.159 19 H 0.250 0.750 20 N -0.150 5.150 21 H 0.109 0.891 22 H 0.126 0.874 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.216 0.784 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.283 8.855 0.012 11.465 hybrid contribution 0.556 0.365 0.008 0.665 sum -6.727 9.219 0.020 11.413 Atomic orbital electron populations 1.20327 0.83354 1.04493 1.04168 1.23362 0.99002 0.90547 0.98255 1.21771 0.90321 1.00965 1.15770 1.23409 1.01936 0.83594 1.02868 1.45140 1.03261 1.04342 1.55246 1.16262 0.78148 0.88506 1.15510 1.21463 0.97080 0.91355 1.18886 1.18685 0.89154 0.93813 1.00260 1.18975 0.92517 0.91792 1.46962 0.92141 1.26428 0.96200 1.03160 0.93123 1.69472 1.03517 1.33631 1.42610 0.85159 0.77366 0.77198 0.79291 1.19255 1.19238 1.19240 1.23293 0.95517 0.83862 1.19999 1.41166 1.01890 1.09116 1.63731 0.75024 1.77475 0.85325 1.24836 1.27394 0.89136 0.87395 0.91353 0.79409 0.78383 0.87134 0.90916 0.79122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 10.44 71.24 0.74 -0.53 15 2 C 0.05 1.65 7.21 43.11 0.31 1.96 15 3 C -0.26 -6.78 10.73 22.01 0.24 -6.55 15 4 C 0.02 0.76 11.25 83.41 0.94 1.70 15 5 N -0.30 -12.49 3.80 -191.88 -0.73 -13.22 15 6 C 0.22 10.32 7.78 130.50 1.02 11.33 15 7 C -0.26 -13.98 10.87 23.79 0.26 -13.72 15 8 C -0.01 -0.77 6.11 -20.00 -0.12 -0.89 15 9 C -0.47 -27.42 9.44 23.36 0.22 -27.20 15 10 H 0.06 3.48 7.84 -2.91 -0.02 3.46 15 11 C 0.02 0.96 5.49 85.13 0.47 1.43 15 12 N -0.86 -45.93 10.37 21.78 0.23 -45.70 15 13 Si 0.99 41.35 29.56 68.60 2.03 43.38 15 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 15 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 17 C -0.10 -5.15 10.96 84.39 0.92 -4.23 15 18 N -0.55 -24.17 5.87 -188.99 -1.11 -25.28 15 19 H 0.41 13.90 8.59 -92.70 -0.80 13.10 15 20 N -0.33 -13.31 12.35 -47.34 -0.58 -13.89 15 21 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.11 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.07 1.40 8.14 -2.38 -0.02 1.38 15 24 H 0.19 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.20 4.42 7.84 -2.91 -0.02 4.40 15 26 H 0.11 6.07 8.06 -2.91 -0.02 6.05 15 27 H 0.28 13.64 8.30 -92.71 -0.77 12.87 15 28 H 0.19 10.12 5.77 -2.91 -0.02 10.11 15 Total: -1.00 -69.57 252.44 5.21 -64.36 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.39 Total: 27.05 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.99 Total: -36.70 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -2.20 Total: -98.09 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -69.57 5.21 -64.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.951 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds