Wall clock time and date at job start Mon Mar 30 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00483 * 2 1 4 4 H 1.48496 * 109.47446 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47002 * 300.00076 * 3 2 1 6 6 H 1.48499 * 109.46845 * 59.99933 * 3 2 1 7 7 C 1.37881 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47028 * 180.02562 * 10 9 7 12 12 C 1.34335 * 126.51001 * 265.02204 * 11 10 9 13 13 N 1.36754 * 109.97017 * 179.97438 * 12 11 10 14 14 H 0.96999 * 125.02921 * 179.97438 * 13 12 11 15 15 C 1.37401 * 109.95015 * 0.02562 * 13 12 11 16 16 N 1.32612 * 133.43177 * 180.02562 * 15 13 12 17 17 C 1.31968 * 119.89676 * 179.97438 * 16 15 13 18 18 C 1.38737 * 120.65000 * 359.97438 * 17 16 15 19 19 N 1.31912 * 120.37228 * 0.02562 * 18 17 16 20 20 C 1.32946 * 119.64714 * 359.72909 * 19 18 17 21 21 H 0.97003 * 119.99448 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47169 * 60.00779 * 9 7 2 23 23 H 1.08998 * 109.47125 * 300.00242 * 9 7 2 24 24 H 1.08996 * 109.47547 * 60.00230 * 10 9 7 25 25 H 1.08998 * 109.47097 * 299.99954 * 10 9 7 26 26 H 1.08000 * 125.02183 * 359.94409 * 12 11 10 27 27 H 1.08011 * 119.67596 * 179.97438 * 17 16 15 28 28 H 1.08006 * 119.81071 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.1726 -5.7066 1.0742 13 7 0.4875 -6.8246 0.6858 14 1 0.1529 -7.5090 1.2861 15 6 0.3442 -6.8355 -0.6807 16 7 -0.2281 -7.6773 -1.5306 17 6 -0.2093 -7.4197 -2.8248 18 6 0.4042 -6.2733 -3.3088 19 7 0.9790 -5.4236 -2.4796 20 6 0.9636 -5.6675 -1.1728 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5568 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6045 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 1.4211 -5.4555 2.0948 27 1 -0.6762 -8.1080 -3.5139 28 1 0.4112 -6.0756 -4.3706 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259769487.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:29 Heat of formation + Delta-G solvation = 45.926840 kcal Electronic energy + Delta-G solvation = -13580.589626 eV Core-core repulsion = 11209.862100 eV Total energy + Delta-G solvation = -2370.727526 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.84457 -39.48785 -36.16759 -35.14142 -33.57583 -31.03158 -30.18439 -26.86167 -25.55981 -24.28052 -23.24124 -20.38318 -19.54910 -18.41301 -18.20652 -17.27948 -16.58515 -16.36187 -15.94442 -14.93176 -14.60008 -14.52138 -13.93821 -13.74189 -13.48288 -13.06267 -12.80070 -12.56617 -12.47823 -12.33772 -11.68966 -11.56211 -11.18436 -10.53099 -9.86858 -9.60648 -9.06505 -8.15999 -6.27724 -0.10803 0.16622 1.41441 1.42765 1.55905 1.62538 1.72891 2.44179 2.89086 3.16701 3.23575 3.42219 3.55222 4.07515 4.16161 4.44103 4.52338 4.56375 4.92343 4.97570 5.06836 5.29210 5.42255 5.55417 5.75079 5.88274 5.89995 6.19276 6.28316 6.62991 6.90071 6.97550 7.41416 8.95955 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045319 B = 0.006659 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.698466 B = 4203.577766 C = 4516.078837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.041 3.959 10 C -0.025 4.025 11 C -0.172 4.172 12 C 0.095 3.905 13 N -0.558 5.558 14 H 0.438 0.562 15 C 0.215 3.785 16 N -0.467 5.467 17 C 0.086 3.914 18 C 0.027 3.973 19 N -0.444 5.444 20 C 0.020 3.980 21 H 0.262 0.738 22 H -0.027 1.027 23 H -0.006 1.006 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.227 0.773 27 H 0.222 0.778 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -15.536 -0.757 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.004 3.996 10 C -0.063 4.063 11 C -0.180 4.180 12 C -0.033 4.033 13 N -0.166 5.166 14 H 0.280 0.720 15 C -0.022 4.022 16 N -0.186 5.186 17 C -0.083 4.083 18 C -0.142 4.142 19 N -0.159 5.159 20 C -0.116 4.116 21 H 0.071 0.929 22 H -0.009 1.009 23 H 0.013 0.987 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.243 0.757 27 H 0.238 0.762 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.869 -15.478 -0.506 15.510 hybrid contribution -0.170 0.774 -0.003 0.793 sum 0.699 -14.704 -0.509 14.729 Atomic orbital electron populations 1.70140 1.07990 1.27557 1.52076 1.26016 0.95722 1.03464 0.94772 0.85370 0.79197 0.78603 0.77693 1.18286 1.20760 1.20103 1.21767 0.93682 0.92211 1.50021 0.91804 1.18866 0.94036 0.92586 0.94097 1.19820 0.96438 0.88816 1.01186 1.20608 1.07846 0.99383 0.90145 1.22319 0.95217 0.85387 1.00417 1.41311 1.49563 1.22675 1.03054 0.72026 1.19332 1.00600 0.94699 0.87561 1.67319 1.17471 1.29870 1.03945 1.24259 0.96253 0.97419 0.90338 1.24291 0.96260 0.91775 1.01894 1.67797 1.15059 1.30237 1.02764 1.20986 1.02668 0.96057 0.91910 0.92928 1.00888 0.98730 0.90136 0.93633 0.75709 0.76200 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.17 13.29 21.45 0.28 -58.88 15 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 15 3 Si 0.97 45.35 29.54 68.60 2.03 47.38 15 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.54 -31.75 9.11 25.60 0.23 -31.52 15 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 15 9 C 0.04 2.32 4.95 29.85 0.15 2.46 15 10 C -0.02 -1.09 5.69 29.85 0.17 -0.92 15 11 C -0.17 -6.64 5.57 -18.64 -0.10 -6.75 15 12 C 0.09 2.65 11.73 83.03 0.97 3.63 15 13 N -0.56 -14.34 6.05 -192.20 -1.16 -15.50 15 14 H 0.44 7.59 8.96 -92.71 -0.83 6.76 15 15 C 0.22 7.10 8.42 134.02 1.13 8.23 15 16 N -0.47 -13.71 10.52 -192.23 -2.02 -15.73 15 17 C 0.09 2.03 11.19 84.79 0.95 2.98 15 18 C 0.03 0.75 11.21 84.80 0.95 1.70 15 19 N -0.44 -17.53 10.55 -184.65 -1.95 -19.48 15 20 C 0.02 0.81 7.49 41.78 0.31 1.12 15 21 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 22 H -0.03 -1.75 8.14 -2.38 -0.02 -1.77 15 23 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 15 24 H 0.08 3.12 8.14 -2.39 -0.02 3.10 15 25 H 0.04 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.23 4.21 8.06 -2.91 -0.02 4.18 15 27 H 0.22 2.70 8.06 -2.90 -0.02 2.68 15 28 H 0.20 3.83 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -79.79 253.84 2.75 -77.03 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 0.35 Total: 3.93 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.23 Total: -18.76 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -4.85 Total: -109.59 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.79 2.75 -77.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259769487.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.959 kcal (2) G-P(sol) polarization free energy of solvation -79.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds