Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36173 * 126.33139 * 2 1 4 4 C 1.50697 * 124.94675 * 359.95329 * 3 2 1 5 5 C 1.50704 * 109.47117 * 270.00120 * 4 3 2 6 6 H 1.07995 * 119.99777 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99662 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00389 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99425 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47534 * 89.99788 * 9 7 5 11 11 H 1.48503 * 109.46933 * 209.99411 * 9 7 5 12 12 H 1.48496 * 109.47318 * 329.99159 * 9 7 5 13 13 N 1.30154 * 110.11048 * 179.97438 * 3 2 1 14 14 C 1.35616 * 109.59017 * 0.02562 * 13 3 2 15 15 C 1.39515 * 134.57513 * 179.97438 * 14 13 3 16 16 N 1.31666 * 120.11405 * 180.02562 * 15 14 13 17 17 C 1.32250 * 122.38515 * 0.02562 * 16 15 14 18 18 C 1.36818 * 121.41748 * 359.97438 * 17 16 15 19 19 C 1.37449 * 126.33063 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46855 * 90.00322 * 1 2 3 21 21 H 1.08996 * 109.47388 * 210.00301 * 1 2 3 22 22 H 1.09002 * 109.47300 * 330.00753 * 1 2 3 23 23 H 1.09000 * 109.47047 * 29.99798 * 4 3 2 24 24 H 1.09006 * 109.47467 * 150.00143 * 4 3 2 25 25 H 0.97000 * 120.00193 * 180.02562 * 8 7 5 26 26 H 1.07996 * 119.94231 * 0.02562 * 15 14 13 27 27 H 1.07994 * 119.29308 * 180.02562 * 17 16 15 28 28 H 1.07995 * 120.54012 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.0970 0.0000 4 6 1.7880 2.5243 -0.0010 5 6 1.6277 2.9993 -1.4222 6 1 1.8539 2.3344 -2.2425 7 6 1.1932 4.2832 -1.6750 8 7 0.9183 5.0931 -0.6760 9 14 0.9938 4.8718 -3.4366 10 1 -0.3852 4.5790 -3.9033 11 1 1.2376 6.3353 -3.5001 12 1 1.9706 4.1691 -4.3068 13 7 3.5214 0.7334 0.0005 14 6 3.6011 -0.6204 0.0004 15 6 4.6508 -1.5395 0.0003 16 7 4.3975 -2.8315 -0.0004 17 6 3.1653 -3.3118 -0.0016 18 6 2.0768 -2.4829 -0.0016 19 6 2.2793 -1.1073 0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8901 0.5137 23 1 0.8281 2.5829 0.5121 24 1 2.5140 3.1544 0.5130 25 1 0.6123 5.9962 -0.8538 26 1 5.6728 -1.1905 0.0008 27 1 3.0150 -4.3812 -0.0017 28 1 1.0767 -2.8904 -0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = 54.599993 kcal Electronic energy + Delta-G solvation = -13837.835969 eV Core-core repulsion = 11467.484539 eV Total energy + Delta-G solvation = -2370.351430 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.30021 -39.52425 -35.46452 -35.24493 -32.77928 -31.78659 -29.62151 -28.03466 -25.96968 -23.72251 -23.44016 -21.11120 -18.70471 -18.61442 -18.19100 -16.85238 -16.80407 -16.47713 -15.39843 -15.16954 -14.63124 -14.49232 -14.34400 -13.85894 -13.39654 -13.29516 -13.03775 -12.72527 -12.63617 -12.05984 -11.70386 -11.46861 -11.09570 -10.68172 -10.57704 -9.74927 -9.19645 -8.28740 -6.41999 -0.16107 0.46238 1.38791 1.41633 1.51767 1.65882 1.80963 2.38449 2.95093 3.03762 3.24122 3.47252 3.70063 3.83380 4.09913 4.22386 4.35686 4.44683 4.61117 4.70181 4.78720 5.03409 5.17123 5.37424 5.44192 5.61238 5.70181 5.91798 6.17636 6.63636 6.87088 7.10336 7.26863 8.81006 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.007432 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.979840 B = 3766.385842 C = 3904.663050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.486 5.486 3 C 0.316 3.684 4 C 0.100 3.900 5 C -0.532 4.532 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.533 5.533 14 C -0.038 4.038 15 C 0.155 3.845 16 N -0.500 5.500 17 C 0.081 3.919 18 C -0.149 4.149 19 C 0.050 3.950 20 H 0.081 0.919 21 H 0.115 0.885 22 H 0.089 0.911 23 H 0.042 0.958 24 H 0.029 0.971 25 H 0.271 0.729 26 H 0.171 0.829 27 H 0.199 0.801 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -13.339 1.054 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.174 5.174 3 C 0.050 3.950 4 C 0.061 3.939 5 C -0.571 4.571 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.159 4.159 15 C -0.012 4.012 16 N -0.211 5.211 17 C -0.068 4.068 18 C -0.171 4.171 19 C -0.067 4.067 20 H 0.099 0.901 21 H 0.133 0.867 22 H 0.108 0.892 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.188 0.812 27 H 0.216 0.784 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.905 -13.296 1.114 13.478 hybrid contribution -1.352 0.995 -0.727 1.829 sum -3.257 -12.301 0.387 12.731 Atomic orbital electron populations 1.22243 0.73717 1.05820 1.04644 1.45414 1.08872 1.04083 1.59070 1.24616 0.84927 0.92249 0.93194 1.17751 0.96484 0.81523 0.98156 1.20981 1.46406 0.98567 0.91115 0.93620 1.25718 0.94302 0.96206 1.01721 1.70015 1.45018 1.07744 1.32870 0.85440 0.78872 0.77560 0.79142 1.18974 1.20238 1.20099 1.70411 1.18938 1.11061 1.25007 1.20736 0.95127 0.91540 1.08543 1.22229 0.98007 0.86537 0.94393 1.67717 1.25007 1.13563 1.14774 1.22725 0.86042 1.01630 0.96396 1.21047 1.03175 0.87480 1.05424 1.19474 0.91429 0.91143 1.04702 0.90053 0.86671 0.89187 0.93956 0.95273 0.92026 0.81206 0.78399 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.97 127.77 1.40 3.49 15 2 N -0.49 -18.30 3.19 -528.69 -1.69 -19.99 15 3 C 0.32 14.67 7.05 137.86 0.97 15.64 15 4 C 0.10 5.10 5.27 29.10 0.15 5.25 15 5 C -0.53 -29.18 9.09 25.60 0.23 -28.94 15 6 H 0.05 2.56 7.74 -2.91 -0.02 2.54 15 7 C 0.02 1.13 5.46 84.66 0.46 1.59 15 8 N -0.92 -51.59 13.29 21.45 0.28 -51.31 15 9 Si 0.97 42.51 29.54 68.60 2.03 44.54 15 10 H -0.26 -10.99 7.11 99.48 0.71 -10.29 15 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 13 N -0.53 -25.59 11.27 -179.84 -2.03 -27.61 15 14 C -0.04 -1.56 7.28 39.51 0.29 -1.27 15 15 C 0.16 5.36 11.28 85.03 0.96 6.32 15 16 N -0.50 -15.24 10.33 -195.76 -2.02 -17.26 15 17 C 0.08 1.99 11.11 84.30 0.94 2.93 15 18 C -0.15 -3.84 10.09 22.13 0.22 -3.62 15 19 C 0.05 1.79 6.92 39.10 0.27 2.06 15 20 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.09 2.55 7.00 -2.39 -0.02 2.53 15 23 H 0.04 2.11 7.01 -2.39 -0.02 2.09 15 24 H 0.03 1.64 8.14 -2.38 -0.02 1.62 15 25 H 0.27 14.25 8.31 -92.71 -0.77 13.47 15 26 H 0.17 5.21 8.06 -2.91 -0.02 5.19 15 27 H 0.20 3.00 8.06 -2.91 -0.02 2.98 15 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -67.27 252.10 3.64 -63.63 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.17 Total: 4.56 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.90 Total: 3.44 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.45 Total: -116.17 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.27 3.64 -63.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.228 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds