Wall clock time and date at job start Mon Mar 30 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34272 * 126.58819 * 2 1 4 4 N 1.37035 * 109.92254 * 179.86890 * 3 2 1 5 5 H 0.96997 * 124.96799 * 180.16481 * 4 3 2 6 6 C 1.36800 * 110.05499 * 0.41420 * 4 3 2 7 7 N 1.32910 * 134.40853 * 179.76235 * 6 4 3 8 8 C 1.31565 * 120.51740 * 179.97438 * 7 6 4 9 9 C 1.50694 * 118.68102 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47676 * 90.00293 * 9 8 7 11 11 H 1.08005 * 119.99582 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00631 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00056 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00065 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47282 * 89.99930 * 14 12 10 16 16 H 1.48499 * 109.47187 * 210.00390 * 14 12 10 17 17 H 1.48506 * 109.46780 * 329.99857 * 14 12 10 18 18 N 1.32138 * 122.63493 * 0.02562 * 8 7 6 19 19 C 1.32279 * 121.17494 * 359.96839 * 18 8 7 20 20 C 1.39383 * 118.46898 * 0.02562 * 19 18 8 21 21 H 1.09002 * 109.47152 * 269.68403 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68503 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68484 * 1 2 3 24 24 H 1.07997 * 125.03623 * 0.02840 * 3 2 1 25 25 H 1.09006 * 109.47106 * 209.99929 * 9 8 7 26 26 H 1.09007 * 109.47622 * 329.99728 * 9 8 7 27 27 H 0.96997 * 120.00085 * 180.02562 * 13 12 10 28 28 H 1.08000 * 120.76440 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3074 1.0781 0.0000 4 7 3.6202 0.6851 0.0029 5 1 4.3807 1.2872 0.0058 6 6 3.7011 -0.6805 -0.0043 7 7 4.7039 -1.5527 -0.0092 8 6 4.4641 -2.8463 -0.0155 9 6 5.6322 -3.7984 -0.0215 10 6 6.0230 -4.1231 1.3973 11 1 5.4800 -3.6835 2.2210 12 6 7.0736 -4.9811 1.6439 13 7 7.4149 -5.2640 2.8821 14 14 8.0123 -5.7419 0.2193 15 1 9.1461 -4.8588 -0.1544 16 1 8.5335 -7.0722 0.6241 17 1 7.1033 -5.8997 -0.9444 18 7 3.2401 -3.3442 -0.0178 19 6 2.1794 -2.5539 -0.0133 20 6 2.3787 -1.1744 -0.0064 21 1 -0.3633 -0.0057 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5089 24 1 1.9669 2.1030 0.0004 25 1 5.3510 -4.7152 -0.5397 26 1 6.4757 -3.3355 -0.5338 27 1 8.1542 -5.8674 3.0556 28 1 1.1819 -2.9679 -0.0148 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:54 Heat of formation + Delta-G solvation = 75.614707 kcal Electronic energy + Delta-G solvation = -13640.921425 eV Core-core repulsion = 11271.481261 eV Total energy + Delta-G solvation = -2369.440163 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49604 -38.40513 -33.69465 -33.05146 -31.73919 -30.93373 -28.23007 -26.44897 -24.05599 -23.33635 -20.85316 -19.36802 -18.42912 -16.82331 -16.39170 -15.94733 -15.07133 -14.31809 -13.85475 -13.41402 -13.20454 -12.90741 -12.77329 -12.47230 -12.18363 -11.91986 -11.72368 -10.79507 -10.54169 -10.31846 -9.96236 -9.87687 -9.36832 -8.58818 -8.54829 -8.52920 -7.70934 -6.03345 -4.02315 1.27758 1.85439 2.73888 2.94148 3.34540 3.41072 3.44676 4.45681 4.48922 4.68870 4.77744 4.87960 4.90502 5.20557 5.30823 5.38391 5.65099 5.66067 5.90180 5.97614 6.16593 6.57062 6.67181 6.97076 7.09902 7.21812 7.35885 7.65970 7.83077 8.49470 8.94639 8.97703 9.54285 11.09763 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.056159 B = 0.006888 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.461499 B = 4064.159243 C = 4188.631299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.147 4.147 3 C 0.040 3.960 4 N -0.578 5.578 5 H 0.419 0.581 6 C 0.324 3.676 7 N -0.532 5.532 8 C 0.389 3.611 9 C 0.048 3.952 10 C -0.505 4.505 11 H 0.070 0.930 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.262 1.262 18 N -0.527 5.527 19 C 0.198 3.802 20 C -0.234 4.234 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.175 0.825 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 11.901 -7.486 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.156 4.156 3 C -0.085 4.085 4 N -0.186 5.186 5 H 0.256 0.744 6 C 0.082 3.918 7 N -0.252 5.252 8 C 0.122 3.878 9 C 0.009 3.991 10 C -0.544 4.544 11 H 0.088 0.912 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.187 1.187 18 N -0.241 5.241 19 C 0.025 3.975 20 C -0.244 4.244 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.192 0.808 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.833 11.310 -7.382 17.314 hybrid contribution 0.269 0.622 -0.442 0.809 sum -10.565 11.931 -7.824 17.753 Atomic orbital electron populations 1.20110 0.89263 1.02216 1.01813 1.20133 0.95259 0.90381 1.09824 1.21573 0.81479 0.99100 1.06322 1.41400 1.08060 1.03896 1.65217 0.74384 1.18602 0.90721 0.85424 0.97056 1.67368 1.34323 1.03129 1.20343 1.23522 0.92445 0.86605 0.85242 1.18655 0.88605 0.91976 0.99866 1.20653 1.16148 1.27947 0.89623 0.91162 1.24896 0.96569 0.95804 0.95731 1.69889 1.28881 1.36138 1.18874 0.86774 0.80553 0.78878 0.83168 1.20073 1.21114 1.18691 1.68463 0.99300 1.39520 1.16844 1.22692 0.98297 0.87481 0.89052 1.20510 0.94667 0.95647 1.13547 0.91683 0.91663 0.91890 0.80826 0.93222 0.94074 0.92523 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.42 36.01 0.38 -0.32 15 2 C -0.15 -1.89 6.32 -102.80 -0.65 -2.54 15 3 C 0.04 0.45 11.74 -16.62 -0.20 0.25 15 4 N -0.58 -8.05 6.03 -12.10 -0.07 -8.12 15 5 H 0.42 4.68 8.96 -40.82 -0.37 4.31 15 6 C 0.32 6.16 8.49 -155.91 -1.32 4.83 15 7 N -0.53 -12.12 10.35 -9.98 -0.10 -12.22 15 8 C 0.39 9.37 6.82 -157.10 -1.07 8.30 15 9 C 0.05 1.24 4.45 -29.04 -0.13 1.11 15 10 C -0.50 -15.07 9.65 -34.44 -0.33 -15.40 15 11 H 0.07 2.32 7.98 -52.48 -0.42 1.90 15 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 13 N -0.90 -28.15 13.96 55.43 0.77 -27.38 15 14 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 15 18 N -0.53 -11.71 10.31 -10.52 -0.11 -11.82 15 19 C 0.20 3.56 11.38 -16.93 -0.19 3.37 15 20 C -0.23 -4.05 6.41 -105.14 -0.67 -4.72 15 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.17 1.16 8.06 -52.49 -0.42 0.73 15 25 H 0.05 1.26 7.20 -51.93 -0.37 0.88 15 26 H 0.04 1.03 7.57 -51.93 -0.39 0.64 15 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 28 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -34.98 250.58 -7.53 -42.51 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -2.83 Total: -0.77 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.29 Total: -3.08 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.49 Total: -59.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.98 -7.53 -42.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.122 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds