Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40245 * 120.27533 * 2 1 4 4 N 1.31212 * 120.28225 * 179.97438 * 3 2 1 5 5 C 1.33979 * 120.81645 * 359.97438 * 4 3 2 6 6 C 1.38856 * 132.58171 * 180.02562 * 5 4 3 7 7 C 1.38665 * 107.65100 * 179.97438 * 6 5 4 8 8 C 1.50702 * 125.50305 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46696 * 124.99907 * 8 7 6 10 10 H 1.07997 * 120.00431 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99839 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00226 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00045 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47225 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46881 * 120.00159 * 13 11 9 16 16 H 1.48497 * 109.47361 * 240.00042 * 13 11 9 17 17 N 1.31411 * 108.99193 * 359.97438 * 7 6 5 18 18 N 1.37170 * 120.53637 * 0.02562 * 5 4 3 19 19 C 1.35530 * 120.27557 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.46905 * 270.02448 * 1 2 3 21 21 H 1.08996 * 109.47370 * 30.02111 * 1 2 3 22 22 H 1.08993 * 109.47384 * 150.02570 * 1 2 3 23 23 H 1.08001 * 119.85733 * 359.97438 * 3 2 1 24 24 H 1.08007 * 126.17344 * 0.25744 * 6 5 4 25 25 H 1.08996 * 109.47036 * 244.99648 * 8 7 6 26 26 H 1.08997 * 109.47079 * 5.00171 * 8 7 6 27 27 H 0.96996 * 120.00437 * 179.97438 * 12 11 9 28 28 H 1.08007 * 120.43471 * 0.04810 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2112 0.0000 4 7 3.5261 1.2113 0.0005 5 6 4.2126 0.0608 0.0015 6 6 5.5721 -0.2222 0.0027 7 6 5.7144 -1.6015 0.0040 8 6 7.0246 -2.3461 0.0050 9 6 7.0583 -3.3017 1.1698 10 1 6.2156 -3.3634 1.8423 11 6 8.1652 -4.0973 1.3769 12 7 9.1917 -4.0220 0.5583 13 14 8.2073 -5.2813 2.8212 14 1 6.9387 -5.1750 3.5856 15 1 8.3670 -6.6695 2.3186 16 1 9.3495 -4.9412 3.7070 17 7 4.5223 -2.1545 0.0043 18 7 3.5552 -1.1431 0.0016 19 6 2.1903 -1.1705 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8897 -0.5141 22 1 -0.3634 -0.8901 -0.5134 23 1 1.6762 2.1477 -0.0004 24 1 6.3738 0.5015 0.0069 25 1 7.1261 -2.9041 -0.9258 26 1 7.8463 -1.6355 0.0942 27 1 9.9705 -4.5814 0.7042 28 1 1.6619 -2.1124 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = 82.217473 kcal Electronic energy + Delta-G solvation = -13534.751358 eV Core-core repulsion = 11165.597512 eV Total energy + Delta-G solvation = -2369.153846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.22637 -39.32772 -35.59248 -35.19099 -33.65527 -30.69143 -30.30291 -27.34064 -25.64575 -25.07990 -23.21353 -21.08535 -19.22686 -18.66774 -17.84069 -16.98560 -16.73206 -16.30137 -15.03145 -14.74815 -14.62754 -14.19533 -14.07813 -13.91972 -13.55385 -13.18264 -13.00965 -12.75871 -12.68816 -12.12383 -11.92402 -11.81782 -11.35751 -10.79149 -10.63062 -10.10014 -8.84430 -8.24826 -6.35728 -0.33733 -0.07489 1.23138 1.37801 1.38928 1.52105 1.68387 2.39410 2.45277 2.92298 3.07509 3.19317 3.53982 3.90839 4.05247 4.34301 4.47284 4.55924 4.80453 4.93803 5.04871 5.09169 5.19620 5.28553 5.36729 5.48243 5.64963 5.75787 6.08327 6.60012 6.65714 6.72921 7.31411 8.86761 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.006449 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.640540 B = 4340.670657 C = 4659.517380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.179 4.179 3 C 0.186 3.814 4 N -0.491 5.491 5 C 0.237 3.763 6 C -0.294 4.294 7 C 0.135 3.865 8 C 0.095 3.905 9 C -0.529 4.529 10 H 0.048 0.952 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.970 3.030 14 H -0.272 1.272 15 H -0.273 1.273 16 H -0.271 1.271 17 N -0.342 5.342 18 N -0.323 5.323 19 C 0.129 3.871 20 H 0.090 0.910 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.227 0.773 24 H 0.161 0.839 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.269 0.731 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 9.276 -0.702 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.186 4.186 3 C 0.002 3.998 4 N -0.202 5.202 5 C 0.010 3.990 6 C -0.325 4.325 7 C -0.023 4.023 8 C 0.056 3.944 9 C -0.567 4.567 10 H 0.066 0.934 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.794 3.206 14 H -0.197 1.197 15 H -0.198 1.198 16 H -0.196 1.196 17 N -0.168 5.168 18 N -0.093 5.093 19 C -0.005 4.005 20 H 0.109 0.891 21 H 0.121 0.879 22 H 0.101 0.899 23 H 0.243 0.757 24 H 0.178 0.822 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.889 8.711 -0.743 20.814 hybrid contribution 0.713 -0.753 0.504 1.153 sum -18.176 7.958 -0.239 19.843 Atomic orbital electron populations 1.20716 0.84003 1.05491 1.04428 1.20993 1.00935 0.90810 1.05815 1.24308 0.87888 1.00586 0.86983 1.68283 1.10850 1.23466 1.17633 1.20694 0.93909 0.82572 1.01824 1.21066 0.93413 0.95365 1.22646 1.22872 0.94914 0.93130 0.91340 1.17668 0.85580 0.93994 0.97163 1.21240 1.02153 1.21890 1.11445 0.93376 1.25872 0.94800 0.98789 0.99582 1.70055 1.06662 1.40995 1.38804 0.85326 0.78180 0.78402 0.78670 1.19670 1.19791 1.19615 1.77885 0.96596 1.08338 1.33998 1.47523 1.07002 1.07461 1.47277 1.22639 0.78385 1.03357 0.96084 0.89134 0.87873 0.89945 0.75669 0.82182 0.96169 0.94866 0.92250 0.78715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.02 71.23 0.71 0.12 15 2 C -0.18 -3.18 5.86 -20.00 -0.12 -3.30 15 3 C 0.19 3.71 10.96 85.27 0.93 4.64 15 4 N -0.49 -15.69 10.48 -192.55 -2.02 -17.71 15 5 C 0.24 9.58 7.92 133.13 1.05 10.64 15 6 C -0.29 -13.48 10.81 22.52 0.24 -13.24 15 7 C 0.13 6.95 6.38 42.72 0.27 7.22 15 8 C 0.09 5.44 5.54 29.10 0.16 5.60 15 9 C -0.53 -32.10 9.06 25.60 0.23 -31.87 15 10 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 11 C 0.01 0.48 5.46 84.65 0.46 0.95 15 12 N -0.93 -56.51 13.29 21.45 0.28 -56.22 15 13 Si 0.97 45.92 29.54 68.60 2.03 47.95 15 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 15 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 17 N -0.34 -16.85 12.61 -47.85 -0.60 -17.46 15 18 N -0.32 -12.77 3.90 -192.50 -0.75 -13.52 15 19 C 0.13 3.40 10.95 83.34 0.91 4.31 15 20 H 0.09 0.44 8.14 -2.38 -0.02 0.42 15 21 H 0.10 0.22 8.10 -2.39 -0.02 0.20 15 22 H 0.08 0.45 8.08 -2.39 -0.02 0.43 15 23 H 0.23 1.92 8.06 -2.91 -0.02 1.89 15 24 H 0.16 6.79 8.06 -2.91 -0.02 6.77 15 25 H 0.02 1.22 8.14 -2.39 -0.02 1.21 15 26 H 0.03 1.93 8.11 -2.39 -0.02 1.91 15 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 28 H 0.20 3.94 8.06 -2.91 -0.02 3.92 15 Total: -1.00 -77.97 254.90 4.97 -73.00 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: 1.16 Total: -1.11 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.87 Total: -14.93 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -3.09 Total: -104.91 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.97 4.97 -73.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.214 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds