Wall clock time and date at job start Mon Mar 30 2020 03:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46960 * 2 1 4 4 C 1.50697 * 109.46915 * 240.00568 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.35037 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34808 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 C 1.50697 * 109.47076 * 120.00546 * 2 1 3 13 13 N 1.30249 * 125.68137 * 59.69153 * 12 2 1 14 14 N 1.40097 * 109.77882 * 179.84155 * 13 12 2 15 15 H 0.97003 * 125.93814 * 180.18161 * 14 13 12 16 16 C 1.36970 * 108.10921 * 0.42555 * 14 13 12 17 17 C 1.39069 * 134.75253 * 179.76307 * 16 14 13 18 18 N 1.31600 * 120.21528 * 180.02562 * 17 16 14 19 19 C 1.32363 * 122.48312 * 0.02562 * 18 17 16 20 20 C 1.36449 * 121.50403 * 359.97438 * 19 18 17 21 21 C 1.40256 * 118.78445 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.47153 * 174.96744 * 1 2 3 23 23 H 1.09006 * 109.46784 * 294.96667 * 1 2 3 24 24 H 1.09001 * 109.46961 * 54.96235 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 1.08004 * 119.89682 * 0.02562 * 17 16 14 27 27 H 1.07999 * 119.25160 * 179.97438 * 19 18 17 28 28 H 1.08004 * 120.60925 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5801 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2153 0.9978 -2.5939 8 14 2.2877 -1.1283 -4.0101 9 1 1.2110 -2.0864 -4.3680 10 1 2.5006 -0.1807 -5.1336 11 1 3.5449 -1.8728 -3.7455 12 6 2.0324 -0.7105 1.2304 13 7 1.7822 -1.9487 1.5480 14 7 2.4169 -2.2657 2.7560 15 1 2.3886 -3.1248 3.2057 16 6 3.0797 -1.1501 3.1943 17 6 3.8647 -0.8496 4.3023 18 7 4.3766 0.3544 4.4444 19 6 4.1764 1.3206 3.5621 20 6 3.4205 1.1199 2.4441 21 6 2.8465 -0.1426 2.2346 22 1 -0.3633 -1.0237 -0.0901 23 1 -0.3633 0.4338 0.9317 24 1 -0.3633 0.5900 -0.8414 25 1 1.0463 1.3719 -3.4728 26 1 4.0548 -1.6068 5.0486 27 1 4.6216 2.2900 3.7311 28 1 3.2669 1.9185 1.7334 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:34 Heat of formation + Delta-G solvation = 85.815088 kcal Electronic energy + Delta-G solvation = -13939.027577 eV Core-core repulsion = 11570.029735 eV Total energy + Delta-G solvation = -2368.997842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25576 -37.87590 -34.62098 -32.26676 -30.89766 -29.92366 -28.74124 -25.16776 -23.65523 -22.78041 -22.16863 -18.88811 -17.73354 -16.96253 -16.15769 -15.50163 -14.72175 -14.65796 -13.89542 -13.87000 -13.02461 -12.69943 -12.48424 -11.75048 -11.52509 -11.08469 -10.90697 -10.69035 -10.38860 -10.18728 -9.79557 -9.75414 -9.41127 -9.06584 -8.71470 -8.44242 -7.68710 -6.09560 -4.12586 1.13640 1.68209 3.10595 3.16028 3.29873 3.35696 3.40314 4.17234 4.41027 4.68170 4.93903 5.09447 5.20514 5.28824 5.32250 5.82721 5.97705 6.06726 6.40719 6.71619 6.77156 6.92133 7.01875 7.15439 7.49325 7.59449 7.78160 7.90349 8.13214 8.22653 8.33068 8.88231 9.50984 10.99225 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040310 B = 0.008303 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.453738 B = 3371.319098 C = 3523.110640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.109 3.891 3 H 0.055 0.945 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.149 3.851 13 N -0.245 5.245 14 N -0.511 5.511 15 H 0.436 0.564 16 C 0.066 3.934 17 C 0.089 3.911 18 N -0.452 5.452 19 C 0.021 3.979 20 C -0.072 4.072 21 C -0.138 4.138 22 H 0.038 0.962 23 H 0.012 0.988 24 H 0.075 0.925 25 H 0.263 0.737 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 -1.391 9.665 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 H 0.073 0.927 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.027 4.027 13 N -0.059 5.059 14 N -0.224 5.224 15 H 0.280 0.720 16 C -0.055 4.055 17 C -0.082 4.082 18 N -0.162 5.162 19 C -0.128 4.128 20 C -0.095 4.095 21 C -0.153 4.153 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.170 0.830 27 H 0.171 0.829 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.631 -2.100 9.885 10.442 hybrid contribution 0.161 -0.509 -1.109 1.231 sum 2.792 -2.609 8.775 9.571 Atomic orbital electron populations 1.21713 0.97038 1.00485 0.99183 1.17575 0.92930 0.95051 0.85562 0.92711 1.20960 1.35858 1.08142 0.89621 0.92350 1.24911 0.95055 0.94761 0.98942 1.69919 1.42837 1.16011 1.23987 0.86546 0.79023 0.79747 0.82355 1.20465 1.21186 1.19999 1.23489 0.92953 0.90163 0.96089 1.76936 1.16554 1.16399 0.96054 1.46227 1.44648 1.11227 1.20303 0.72011 1.20117 0.98069 0.89609 0.97674 1.21733 0.96681 0.94763 0.95039 1.67452 1.19263 1.00109 1.29358 1.21943 1.00638 0.98318 0.91904 1.21523 0.94426 0.95861 0.97649 1.19367 1.04033 0.95321 0.96592 0.94285 0.96940 0.90618 0.92738 0.83005 0.82898 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.95 37.16 0.33 -2.63 15 2 C 0.11 2.69 2.59 -92.92 -0.24 2.45 15 3 H 0.05 1.39 7.98 -51.93 -0.41 0.98 15 4 C -0.51 -13.74 8.48 -34.44 -0.29 -14.03 15 5 H 0.06 1.63 7.75 -52.49 -0.41 1.22 15 6 C 0.07 1.76 5.29 -17.82 -0.09 1.67 15 7 N -0.89 -24.53 11.98 55.43 0.66 -23.86 15 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 12 C 0.15 3.32 5.67 -82.14 -0.47 2.85 15 13 N -0.24 -5.21 12.57 33.85 0.43 -4.79 15 14 N -0.51 -8.62 7.43 32.36 0.24 -8.37 15 15 H 0.44 5.46 8.96 -182.60 -1.64 3.82 15 16 C 0.07 1.14 7.38 -84.18 -0.62 0.52 15 17 C 0.09 1.32 11.25 -17.34 -0.20 1.13 15 18 N -0.45 -7.10 10.32 -13.42 -0.14 -7.24 15 19 C 0.02 0.32 11.09 -17.97 -0.20 0.12 15 20 C -0.07 -1.23 10.07 -39.47 -0.40 -1.62 15 21 C -0.14 -2.72 6.16 -106.93 -0.66 -3.38 15 22 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 24 H 0.07 1.89 6.84 -51.93 -0.36 1.54 15 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.15 1.68 8.06 -52.48 -0.42 1.26 15 27 H 0.15 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.14 2.22 8.00 -52.48 -0.42 1.80 15 LS Contribution 250.35 15.07 3.77 3.77 Total: -1.00 -29.93 250.35 -6.95 -36.88 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.06 Total: 0.46 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.83 Total: -12.93 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 1.19 Total: -44.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.93 -6.95 -36.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.693 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds