Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46950 * 2 1 4 4 C 1.50701 * 109.46615 * 119.99774 * 2 1 3 5 5 H 1.07992 * 120.00196 * 114.36525 * 4 2 1 6 6 C 1.37880 * 119.99927 * 294.35719 * 4 2 1 7 7 N 1.31521 * 119.99856 * 156.87534 * 6 4 2 8 8 Si 1.86800 * 120.00471 * 336.87945 * 6 4 2 9 9 H 1.48494 * 109.47567 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46865 * 300.00230 * 8 6 4 11 11 H 1.48504 * 109.46986 * 59.99294 * 8 6 4 12 12 C 1.50699 * 109.47303 * 239.99451 * 2 1 3 13 13 N 1.30252 * 125.68185 * 300.02835 * 12 2 1 14 14 N 1.40093 * 109.77867 * 180.02562 * 13 12 2 15 15 H 0.96995 * 125.94164 * 180.02562 * 14 13 12 16 16 C 1.36966 * 108.10912 * 359.97438 * 14 13 12 17 17 C 1.39085 * 134.75748 * 179.97438 * 16 14 13 18 18 N 1.31603 * 120.21079 * 180.02562 * 17 16 14 19 19 C 1.32364 * 122.49160 * 359.97438 * 18 17 16 20 20 C 1.36449 * 121.49697 * 0.02562 * 19 18 17 21 21 C 1.40248 * 118.78888 * 359.67568 * 20 19 18 22 22 H 1.08991 * 109.47549 * 293.18358 * 1 2 3 23 23 H 1.09001 * 109.46748 * 53.18384 * 1 2 3 24 24 H 1.08998 * 109.46934 * 173.17794 * 1 2 3 25 25 H 0.96998 * 119.99619 * 354.93552 * 7 6 4 26 26 H 1.07994 * 119.89094 * 359.97438 * 17 16 14 27 27 H 1.07999 * 119.24919 * 180.02562 * 19 18 17 28 28 H 1.07997 * 120.60471 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5760 -1.6384 1.1342 6 6 1.7977 -0.1753 2.4794 7 7 1.8075 -0.9527 3.5403 8 14 1.4657 1.6536 2.6648 9 1 1.2457 1.9741 4.0980 10 1 2.6312 2.4220 2.1585 11 1 0.2557 2.0186 1.8850 12 6 2.0324 -0.7105 -1.2304 13 7 1.7865 -1.9502 -1.5454 14 7 2.4173 -2.2658 -2.7559 15 1 2.3886 -3.1246 -3.2058 16 6 3.0804 -1.1503 -3.1939 17 6 3.8664 -0.8499 -4.3014 18 7 4.3792 0.3538 -4.4426 19 6 4.1791 1.3200 -3.5602 20 6 3.4222 1.1193 -2.4428 21 6 2.8421 -0.1409 -2.2373 22 1 -0.3634 0.4045 0.9446 23 1 -0.3633 0.6158 -0.8227 24 1 -0.3633 -1.0204 -0.1221 25 1 1.9066 -1.9121 3.4376 26 1 4.0571 -1.6072 -5.0473 27 1 4.6250 2.2891 -3.7286 28 1 3.2687 1.9178 -1.7320 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = 87.678675 kcal Electronic energy + Delta-G solvation = -13998.314374 eV Core-core repulsion = 11629.397343 eV Total energy + Delta-G solvation = -2368.917030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37097 -37.98446 -34.78523 -32.36827 -31.16191 -30.14275 -29.02780 -24.84972 -23.73960 -22.80686 -22.17331 -18.80610 -17.81234 -17.52041 -16.85590 -15.61693 -14.83237 -14.25719 -14.04234 -13.90698 -13.39218 -12.82397 -12.60332 -11.96796 -11.80347 -11.36399 -11.02715 -10.62743 -10.29807 -10.01771 -9.96492 -9.78043 -9.52145 -9.05124 -8.83856 -8.24990 -7.81079 -6.51133 -4.10649 1.03066 1.58546 3.00032 3.05397 3.37168 3.40798 3.58468 4.07290 4.46863 4.58786 4.83084 4.96461 5.06729 5.17902 5.24967 5.70616 5.83633 5.91690 6.27752 6.34507 6.45550 6.65244 6.75952 6.91853 7.03566 7.29766 7.55178 7.90614 8.08315 8.18697 8.35430 8.85954 9.54262 10.85868 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.009368 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.214732 B = 2988.115842 C = 3365.996678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.040 0.960 4 C -0.598 4.598 5 H 0.060 0.940 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.153 3.847 13 N -0.239 5.239 14 N -0.509 5.509 15 H 0.437 0.563 16 C 0.067 3.933 17 C 0.092 3.908 18 N -0.451 5.451 19 C 0.024 3.976 20 C -0.076 4.076 21 C -0.140 4.140 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.050 0.950 25 H 0.271 0.729 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 2.947 -12.718 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.066 3.934 3 H 0.058 0.942 4 C -0.636 4.636 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.200 1.200 12 C -0.023 4.023 13 N -0.054 5.054 14 N -0.222 5.222 15 H 0.281 0.719 16 C -0.054 4.054 17 C -0.079 4.079 18 N -0.161 5.161 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.155 4.155 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.171 0.829 27 H 0.172 0.828 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.058 3.272 -11.932 12.418 hybrid contribution 0.251 -1.332 -0.890 1.622 sum 1.309 1.940 -12.821 13.033 Atomic orbital electron populations 1.22153 0.97232 1.00639 0.99836 1.17804 0.92718 0.94626 0.88240 0.94204 1.21770 1.41178 1.10614 0.90052 0.92222 1.25718 0.93266 1.05807 0.91890 1.70838 1.43457 1.06518 1.31828 0.84193 0.77363 0.75944 0.76442 1.20909 1.20706 1.20038 1.23008 0.93552 0.90261 0.95439 1.76941 1.16498 1.16082 0.95867 1.46217 1.44629 1.11345 1.19983 0.71850 1.20121 0.98028 0.89482 0.97737 1.21770 0.96401 0.94771 0.94964 1.67466 1.19219 1.00098 1.29316 1.21954 1.00437 0.98357 0.91765 1.21487 0.94761 0.95801 0.97797 1.19347 1.04077 0.95415 0.96644 0.92264 0.95725 0.93071 0.91949 0.82859 0.82791 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.90 37.16 0.33 -2.73 15 2 C 0.09 2.05 2.32 -92.92 -0.22 1.83 15 3 H 0.04 0.89 6.58 -51.93 -0.34 0.55 15 4 C -0.60 -16.55 8.75 -34.44 -0.30 -16.85 15 5 H 0.06 1.84 7.99 -52.49 -0.42 1.42 15 6 C 0.04 1.11 5.19 -17.82 -0.09 1.02 15 7 N -0.89 -26.86 13.70 55.43 0.76 -26.10 15 8 Si 1.03 23.89 26.44 -169.99 -4.50 19.39 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 11 H -0.27 -5.81 6.15 56.52 0.35 -5.46 15 12 C 0.15 3.36 5.67 -82.14 -0.47 2.89 15 13 N -0.24 -5.10 12.55 33.85 0.42 -4.67 15 14 N -0.51 -8.51 7.43 32.36 0.24 -8.27 15 15 H 0.44 5.44 8.96 -182.61 -1.64 3.81 15 16 C 0.07 1.14 7.39 -84.18 -0.62 0.51 15 17 C 0.09 1.33 11.25 -17.34 -0.20 1.14 15 18 N -0.45 -6.86 10.32 -13.41 -0.14 -7.00 15 19 C 0.02 0.35 11.09 -17.97 -0.20 0.15 15 20 C -0.08 -1.23 10.07 -39.47 -0.40 -1.63 15 21 C -0.14 -2.68 6.16 -106.93 -0.66 -3.34 15 22 H 0.06 1.31 5.47 -51.93 -0.28 1.03 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.05 1.14 8.12 -51.93 -0.42 0.72 15 25 H 0.27 8.17 8.73 -40.82 -0.36 7.82 15 26 H 0.15 1.64 8.06 -52.49 -0.42 1.21 15 27 H 0.15 1.72 8.06 -52.49 -0.42 1.30 15 28 H 0.14 2.01 8.00 -52.49 -0.42 1.59 15 LS Contribution 245.71 15.07 3.70 3.70 Total: -1.00 -31.58 245.71 -6.32 -37.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.00 Total: 2.06 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.82 Total: -17.01 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 1.29 Total: -46.04 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.50 Total: 19.39 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.58 -6.32 -37.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.579 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds