Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46950 * 2 1 4 4 C 1.50701 * 109.46615 * 119.99774 * 2 1 3 5 5 H 1.07992 * 120.00196 * 114.36525 * 4 2 1 6 6 C 1.37880 * 119.99927 * 294.35719 * 4 2 1 7 7 N 1.31521 * 119.99856 * 156.87534 * 6 4 2 8 8 Si 1.86800 * 120.00471 * 336.87945 * 6 4 2 9 9 H 1.48494 * 109.47567 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46865 * 300.00230 * 8 6 4 11 11 H 1.48504 * 109.46986 * 59.99294 * 8 6 4 12 12 C 1.50699 * 109.47303 * 239.99451 * 2 1 3 13 13 N 1.30252 * 125.68185 * 300.02835 * 12 2 1 14 14 N 1.40093 * 109.77867 * 180.02562 * 13 12 2 15 15 H 0.96995 * 125.94164 * 180.02562 * 14 13 12 16 16 C 1.36966 * 108.10912 * 359.97438 * 14 13 12 17 17 C 1.39085 * 134.75748 * 179.97438 * 16 14 13 18 18 N 1.31603 * 120.21079 * 180.02562 * 17 16 14 19 19 C 1.32364 * 122.49160 * 359.97438 * 18 17 16 20 20 C 1.36449 * 121.49697 * 0.02562 * 19 18 17 21 21 C 1.40248 * 118.78888 * 359.67568 * 20 19 18 22 22 H 1.08991 * 109.47549 * 293.18358 * 1 2 3 23 23 H 1.09001 * 109.46748 * 53.18384 * 1 2 3 24 24 H 1.08998 * 109.46934 * 173.17794 * 1 2 3 25 25 H 0.96998 * 119.99619 * 354.93552 * 7 6 4 26 26 H 1.07994 * 119.89094 * 359.97438 * 17 16 14 27 27 H 1.07999 * 119.24919 * 180.02562 * 19 18 17 28 28 H 1.07997 * 120.60471 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5760 -1.6384 1.1342 6 6 1.7977 -0.1753 2.4794 7 7 1.8075 -0.9527 3.5403 8 14 1.4657 1.6536 2.6648 9 1 1.2457 1.9741 4.0980 10 1 2.6312 2.4220 2.1585 11 1 0.2557 2.0186 1.8850 12 6 2.0324 -0.7105 -1.2304 13 7 1.7865 -1.9502 -1.5454 14 7 2.4173 -2.2658 -2.7559 15 1 2.3886 -3.1246 -3.2058 16 6 3.0804 -1.1503 -3.1939 17 6 3.8664 -0.8499 -4.3014 18 7 4.3792 0.3538 -4.4426 19 6 4.1791 1.3200 -3.5602 20 6 3.4222 1.1193 -2.4428 21 6 2.8421 -0.1409 -2.2373 22 1 -0.3634 0.4045 0.9446 23 1 -0.3633 0.6158 -0.8227 24 1 -0.3633 -1.0204 -0.1221 25 1 1.9066 -1.9121 3.4376 26 1 4.0571 -1.6072 -5.0473 27 1 4.6250 2.2891 -3.7286 28 1 3.2687 1.9178 -1.7320 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = 64.826361 kcal Electronic energy + Delta-G solvation = -13999.305324 eV Core-core repulsion = 11629.397343 eV Total energy + Delta-G solvation = -2369.907981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.71708 -39.25834 -36.58947 -34.12586 -32.69199 -31.56609 -30.42092 -26.83393 -25.08705 -24.25931 -23.66474 -20.48355 -19.48447 -19.15396 -18.19579 -16.82893 -16.23256 -16.03792 -15.40984 -15.22305 -15.05489 -14.45622 -14.16770 -13.76279 -13.22857 -13.08033 -12.58494 -12.39835 -11.92271 -11.77735 -11.54032 -11.40149 -11.00089 -10.71886 -10.38708 -10.26779 -9.11581 -8.71878 -6.34474 -0.25080 0.36440 1.52978 1.54695 1.60252 1.70636 1.80014 2.55249 2.86187 3.02421 3.45006 3.58786 3.67211 3.80709 3.99265 4.38884 4.55153 4.59310 4.77320 4.79935 4.92299 5.08171 5.16998 5.35169 5.56085 5.69724 5.93324 6.04717 6.33246 6.54853 6.62384 6.97327 7.40055 8.60725 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.009368 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.214732 B = 2988.115842 C = 3365.996678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.085 3.915 3 H 0.058 0.942 4 C -0.599 4.599 5 H 0.009 0.991 6 C -0.011 4.011 7 N -0.929 5.929 8 Si 1.075 2.925 9 H -0.290 1.290 10 H -0.255 1.255 11 H -0.239 1.239 12 C 0.127 3.873 13 N -0.275 5.275 14 N -0.493 5.493 15 H 0.454 0.546 16 C 0.061 3.939 17 C 0.107 3.893 18 N -0.459 5.459 19 C 0.035 3.965 20 C -0.090 4.090 21 C -0.170 4.170 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.251 0.749 26 H 0.194 0.806 27 H 0.190 0.810 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 5.104 -15.162 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.076 0.924 4 C -0.637 4.637 5 H 0.027 0.973 6 C -0.210 4.210 7 N -0.563 5.563 8 Si 0.894 3.106 9 H -0.217 1.217 10 H -0.179 1.179 11 H -0.163 1.163 12 C -0.049 4.049 13 N -0.091 5.091 14 N -0.210 5.210 15 H 0.301 0.699 16 C -0.060 4.060 17 C -0.065 4.065 18 N -0.168 5.168 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.184 4.184 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.207 0.793 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.453 5.416 -14.418 15.470 hybrid contribution 0.221 -2.125 -0.258 2.152 sum 1.674 3.291 -14.676 15.134 Atomic orbital electron populations 1.22032 0.96064 1.00346 1.00808 1.17707 0.93600 0.95082 0.87187 0.92390 1.21853 1.40343 1.08941 0.92586 0.97282 1.27290 0.92350 1.09893 0.91438 1.70984 1.46710 1.05586 1.33041 0.83712 0.79727 0.70412 0.76718 1.21661 1.17934 1.16253 1.22789 0.95260 0.90847 0.95974 1.76776 1.17857 1.16485 0.98000 1.46077 1.43887 1.12321 1.18689 0.69856 1.20400 0.98544 0.88762 0.98295 1.22410 0.94318 0.95349 0.94410 1.67621 1.19285 1.00448 1.29478 1.22514 0.98868 0.99507 0.90466 1.21734 0.95263 0.95222 0.99022 1.19565 1.04798 0.97391 0.96654 0.92760 0.92476 0.94688 0.94008 0.78918 0.79266 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.90 71.98 0.64 -5.09 15 2 C 0.09 3.96 2.32 -12.28 -0.03 3.94 15 3 H 0.06 2.47 6.58 -2.39 -0.02 2.46 15 4 C -0.60 -34.21 8.75 25.60 0.22 -33.99 15 5 H 0.01 0.58 7.99 -2.91 -0.02 0.55 15 6 C -0.01 -0.62 5.19 84.65 0.44 -0.18 15 7 N -0.93 -58.03 13.70 21.45 0.29 -57.74 15 8 Si 1.08 47.07 26.44 68.60 1.81 48.88 15 9 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 10 H -0.25 -10.05 7.11 99.48 0.71 -9.34 15 11 H -0.24 -9.06 6.15 99.48 0.61 -8.45 15 12 C 0.13 5.54 5.67 43.52 0.25 5.78 15 13 N -0.27 -11.88 12.55 -46.82 -0.59 -12.47 15 14 N -0.49 -16.05 7.43 -51.52 -0.38 -16.44 15 15 H 0.45 10.74 8.96 -213.33 -1.91 8.83 15 16 C 0.06 1.93 7.39 39.24 0.29 2.22 15 17 C 0.11 2.70 11.25 84.93 0.96 3.65 15 18 N -0.46 -12.17 10.32 -196.35 -2.03 -14.19 15 19 C 0.03 0.87 11.09 84.19 0.93 1.81 15 20 C -0.09 -2.69 10.07 22.34 0.22 -2.46 15 21 C -0.17 -6.25 6.16 -21.36 -0.13 -6.38 15 22 H 0.05 2.32 5.47 -2.39 -0.01 2.31 15 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.03 1.56 8.12 -2.39 -0.02 1.54 15 25 H 0.25 16.15 8.73 -92.71 -0.81 15.34 15 26 H 0.19 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.19 3.31 8.06 -2.91 -0.02 3.29 15 28 H 0.15 3.99 8.00 -2.91 -0.02 3.97 15 Total: -1.00 -71.31 245.71 2.05 -69.26 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.86 Total: 13.39 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 3.80 Total: -30.70 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.70 Total: -100.84 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.81 Total: 48.88 kcal Total: -71.31 2.05 -69.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.089 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds