Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48501 * 109.46854 * 270.00388 * 3 2 1 5 5 H 1.48495 * 109.46995 * 30.00420 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00460 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38242 * 119.99675 * 279.72800 * 12 9 7 14 14 C 1.38235 * 119.99584 * 179.74496 * 13 12 9 15 15 C 1.38241 * 120.00266 * 0.52428 * 14 13 12 16 16 C 1.50695 * 120.00334 * 179.77394 * 15 14 13 17 17 C 1.52996 * 117.49855 * 8.59316 * 16 15 14 18 18 C 1.52994 * 60.00424 * 252.51722 * 17 16 15 19 19 C 1.38240 * 119.99366 * 359.75016 * 15 14 13 20 20 C 1.38229 * 120.00483 * 359.97438 * 19 15 14 21 21 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 23 23 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 24 24 H 1.07997 * 120.00052 * 359.97438 * 13 12 9 25 25 H 1.07992 * 119.99943 * 180.29777 * 14 13 12 26 26 H 1.08996 * 115.55059 * 154.31066 * 16 15 14 27 27 H 1.08996 * 117.50051 * 0.02562 * 17 16 15 28 28 H 1.09005 * 117.49581 * 145.02218 * 17 16 15 29 29 H 1.08998 * 117.49778 * 252.51182 * 18 17 16 30 30 H 1.09000 * 117.49971 * 107.49241 * 18 17 16 31 31 H 1.08008 * 119.99692 * 180.02562 * 19 15 14 32 32 H 1.07997 * 120.00420 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6802 -0.8912 11 7 4.0017 -0.5019 1.1983 12 6 4.0139 -2.6150 -0.0010 13 6 4.0540 -3.3337 1.1792 14 6 4.5098 -4.6388 1.1784 15 6 4.9357 -5.2215 -0.0006 16 6 5.4374 -6.6425 -0.0006 17 6 5.2648 -7.4526 1.2858 18 6 6.6535 -6.9622 0.8711 19 6 4.9009 -4.5007 -1.1797 20 6 4.4397 -3.1976 -1.1800 21 1 -0.4850 0.8401 0.0004 22 1 3.6785 -0.9595 2.0374 23 1 5.0083 -0.4318 1.1894 24 1 3.7257 -2.8769 2.1011 25 1 4.5366 -5.2019 2.0995 26 1 5.3430 -7.1744 -0.9473 27 1 4.7881 -6.9579 2.1319 28 1 5.0565 -8.5178 1.1855 29 1 7.3588 -7.7048 0.4981 30 1 7.0906 -6.1448 1.4446 31 1 5.2332 -4.9561 -2.1010 32 1 4.4121 -2.6347 -2.1012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = 51.512571 kcal Electronic energy + Delta-G solvation = -13948.145147 eV Core-core repulsion = 11681.200180 eV Total energy + Delta-G solvation = -2266.944967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37112 -36.97653 -34.40092 -31.80108 -30.40437 -29.41003 -26.29451 -23.65130 -22.72177 -22.03372 -20.70149 -19.46415 -16.88167 -16.50867 -15.37859 -14.74563 -14.67172 -14.17374 -13.83205 -13.71856 -12.88297 -12.55823 -12.35873 -12.16627 -11.64300 -11.53437 -11.12709 -10.84854 -10.73224 -10.45831 -10.22699 -10.00119 -9.86812 -9.23422 -8.52031 -8.40462 -7.80451 -7.18752 -5.98628 -4.08673 1.86254 1.92837 3.52198 3.62454 3.81840 3.94120 4.39670 4.66635 4.72404 4.89537 5.03006 5.21266 5.31464 5.42377 5.49000 5.60271 5.73440 5.81006 5.90495 5.95096 6.06165 6.11320 6.23794 6.48126 6.57005 6.82478 6.99953 7.02768 7.33215 7.53303 7.65175 8.18874 8.35261 8.71792 9.02309 9.65575 11.11146 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.057295 B = 0.006699 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.581778 B = 4179.034128 C = 4220.633534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.084 3.916 3 Si 0.867 3.133 4 H -0.297 1.297 5 H -0.304 1.304 6 H -0.192 1.192 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.217 3.783 10 H 0.044 0.956 11 N -0.834 5.834 12 C -0.067 4.067 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.080 4.080 16 C -0.107 4.107 17 C -0.180 4.180 18 C -0.174 4.174 19 C -0.115 4.115 20 C -0.118 4.118 21 H 0.263 0.737 22 H 0.329 0.671 23 H 0.307 0.693 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 -10.507 1.471 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.120 4.120 3 Si 0.694 3.306 4 H -0.225 1.225 5 H -0.232 1.232 6 H -0.114 1.114 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.108 3.892 10 H 0.062 0.938 11 N -0.363 5.363 12 C -0.069 4.069 13 C -0.134 4.134 14 C -0.139 4.139 15 C -0.080 4.080 16 C -0.125 4.125 17 C -0.217 4.217 18 C -0.211 4.211 19 C -0.133 4.133 20 C -0.137 4.137 21 H 0.072 0.928 22 H 0.143 0.857 23 H 0.118 0.882 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.036 -9.767 1.229 15.549 hybrid contribution 0.492 -0.172 0.068 0.526 sum 12.528 -9.939 1.297 16.044 Atomic orbital electron populations 1.69966 1.06976 1.27321 1.49479 1.25000 0.94512 1.00096 0.92385 0.87201 0.84628 0.80995 0.77793 1.22493 1.23168 1.11351 1.20728 0.87244 0.94489 1.53247 0.91320 1.18601 0.96380 0.83949 0.90319 0.93775 1.60077 1.12668 1.57778 1.05787 1.21251 0.93471 0.99708 0.92470 1.20921 0.99956 0.94008 0.98501 1.20892 1.00520 0.95323 0.97194 1.18914 1.01795 0.93498 0.93843 1.20965 1.02132 0.93814 0.95589 1.23040 0.99995 0.99816 0.98852 1.22996 0.90995 1.03329 1.03796 1.20822 1.00945 0.94638 0.96918 1.21053 0.99535 0.94929 0.98192 0.92810 0.85672 0.88152 0.86435 0.86935 0.87479 0.88372 0.88806 0.88895 0.88755 0.86969 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 2 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 21.70 26.94 -169.99 -4.58 17.12 16 4 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.19 -4.42 5.17 56.52 0.29 -4.13 16 7 C -0.52 -14.56 9.29 -34.44 -0.32 -14.88 16 8 H 0.07 2.15 7.98 -52.49 -0.42 1.73 16 9 C 0.22 4.95 2.35 -70.02 -0.16 4.78 16 10 H 0.04 1.03 7.43 -51.93 -0.39 0.65 16 11 N -0.83 -17.08 5.65 -6.65 -0.04 -17.12 16 12 C -0.07 -1.35 4.88 -104.62 -0.51 -1.86 16 13 C -0.12 -2.14 9.29 -39.58 -0.37 -2.51 16 14 C -0.12 -1.98 9.30 -39.58 -0.37 -2.35 16 15 C -0.08 -1.25 5.61 -104.62 -0.59 -1.84 16 16 C -0.11 -1.33 6.04 -91.77 -0.55 -1.88 16 17 C -0.18 -1.95 9.86 -26.74 -0.26 -2.21 16 18 C -0.17 -1.84 10.16 -26.73 -0.27 -2.11 16 19 C -0.12 -1.87 9.74 -39.58 -0.39 -2.26 16 20 C -0.12 -2.20 9.67 -39.59 -0.38 -2.58 16 21 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 22 H 0.33 6.51 7.33 -39.29 -0.29 6.22 16 23 H 0.31 5.46 9.06 -39.29 -0.36 5.10 16 24 H 0.12 2.11 6.65 -52.49 -0.35 1.76 16 25 H 0.11 1.58 6.02 -52.49 -0.32 1.27 16 26 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.10 1.08 6.18 -51.93 -0.32 0.76 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -31.13 265.23 -8.34 -39.47 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.22 Total: 11.18 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -4.27 Total: -27.34 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.74 Total: -44.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.58 Total: 17.12 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.13 -8.34 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.980 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds