Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48501 * 109.46854 * 270.00388 * 3 2 1 5 5 H 1.48495 * 109.46995 * 30.00420 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00460 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38242 * 119.99675 * 279.72800 * 12 9 7 14 14 C 1.38235 * 119.99584 * 179.74496 * 13 12 9 15 15 C 1.38241 * 120.00266 * 0.52428 * 14 13 12 16 16 C 1.50695 * 120.00334 * 179.77394 * 15 14 13 17 17 C 1.52996 * 117.49855 * 8.59316 * 16 15 14 18 18 C 1.52994 * 60.00424 * 252.51722 * 17 16 15 19 19 C 1.38240 * 119.99366 * 359.75016 * 15 14 13 20 20 C 1.38229 * 120.00483 * 359.97438 * 19 15 14 21 21 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 23 23 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 24 24 H 1.07997 * 120.00052 * 359.97438 * 13 12 9 25 25 H 1.07992 * 119.99943 * 180.29777 * 14 13 12 26 26 H 1.08996 * 115.55059 * 154.31066 * 16 15 14 27 27 H 1.08996 * 117.50051 * 0.02562 * 17 16 15 28 28 H 1.09005 * 117.49581 * 145.02218 * 17 16 15 29 29 H 1.08998 * 117.49778 * 252.51182 * 18 17 16 30 30 H 1.09000 * 117.49971 * 107.49241 * 18 17 16 31 31 H 1.08008 * 119.99692 * 180.02562 * 19 15 14 32 32 H 1.07997 * 120.00420 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6802 -0.8912 11 7 4.0017 -0.5019 1.1983 12 6 4.0139 -2.6150 -0.0010 13 6 4.0540 -3.3337 1.1792 14 6 4.5098 -4.6388 1.1784 15 6 4.9357 -5.2215 -0.0006 16 6 5.4374 -6.6425 -0.0006 17 6 5.2648 -7.4526 1.2858 18 6 6.6535 -6.9622 0.8711 19 6 4.9009 -4.5007 -1.1797 20 6 4.4397 -3.1976 -1.1800 21 1 -0.4850 0.8401 0.0004 22 1 3.6785 -0.9595 2.0374 23 1 5.0083 -0.4318 1.1894 24 1 3.7257 -2.8769 2.1011 25 1 4.5366 -5.2019 2.0995 26 1 5.3430 -7.1744 -0.9473 27 1 4.7881 -6.9579 2.1319 28 1 5.0565 -8.5178 1.1855 29 1 7.3588 -7.7048 0.4981 30 1 7.0906 -6.1448 1.4446 31 1 5.2332 -4.9561 -2.1010 32 1 4.4121 -2.6347 -2.1012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = 31.891955 kcal Electronic energy + Delta-G solvation = -13948.995961 eV Core-core repulsion = 11681.200180 eV Total energy + Delta-G solvation = -2267.795781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65274 -38.15347 -36.01271 -33.91211 -31.75490 -30.80636 -28.26993 -25.11025 -23.91827 -23.03652 -22.16138 -20.82624 -18.92480 -17.79247 -16.85267 -16.24833 -16.18854 -15.75506 -15.24847 -15.05302 -14.40212 -14.16757 -13.96845 -13.52037 -13.34184 -12.77594 -12.53522 -12.38971 -12.20156 -11.77285 -11.66071 -11.48163 -11.27319 -11.16411 -10.73645 -9.75925 -9.21668 -8.86819 -8.24022 -6.37475 0.51338 0.56860 1.51393 1.58127 1.94963 2.61462 2.75202 3.14546 3.22843 3.69151 3.95377 4.04693 4.16258 4.22470 4.24326 4.24856 4.39009 4.65567 4.74468 4.80774 4.94613 5.03266 5.17245 5.21489 5.26822 5.30070 5.54253 5.61337 5.74361 5.89467 6.12657 6.21329 6.50592 6.77678 7.04026 7.40650 8.89536 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.057295 B = 0.006699 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.581778 B = 4179.034128 C = 4220.633534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.300 1.300 5 H -0.315 1.315 6 H -0.156 1.156 7 C -0.516 4.516 8 H 0.020 0.980 9 C 0.227 3.773 10 H 0.041 0.959 11 N -0.835 5.835 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.125 4.125 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.176 4.176 18 C -0.160 4.160 19 C -0.118 4.118 20 C -0.133 4.133 21 H 0.262 0.738 22 H 0.335 0.665 23 H 0.330 0.670 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.298 -11.750 1.813 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.228 1.228 5 H -0.243 1.243 6 H -0.076 1.076 7 C -0.554 4.554 8 H 0.038 0.962 9 C 0.117 3.883 10 H 0.059 0.941 11 N -0.365 5.365 12 C -0.101 4.101 13 C -0.145 4.145 14 C -0.143 4.143 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.213 4.213 18 C -0.197 4.197 19 C -0.136 4.136 20 C -0.151 4.151 21 H 0.071 0.929 22 H 0.149 0.851 23 H 0.143 0.857 24 H 0.134 0.866 25 H 0.153 0.847 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.762 -11.032 1.577 18.496 hybrid contribution -0.336 0.020 -0.039 0.339 sum 14.426 -11.011 1.538 18.213 Atomic orbital electron populations 1.70118 1.08972 1.28106 1.52133 1.25958 0.95152 1.04071 0.92272 0.86265 0.84532 0.75796 0.77664 1.22828 1.24287 1.07603 1.20969 0.90319 0.92313 1.51779 0.96199 1.18236 0.92867 0.86280 0.90963 0.94124 1.59734 1.14372 1.57340 1.05065 1.21044 0.96200 0.98837 0.94014 1.21002 1.00472 0.95101 0.97902 1.21158 0.99861 0.94552 0.98689 1.19331 0.99786 0.95059 0.93130 1.21038 1.04221 0.92124 0.97204 1.23147 1.00094 1.00607 0.97425 1.23070 0.90922 1.03397 1.02291 1.21127 1.00197 0.93725 0.98502 1.21206 1.00037 0.96196 0.97693 0.92932 0.85115 0.85708 0.86618 0.84691 0.86136 0.88824 0.86921 0.86670 0.89224 0.84253 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.72 13.96 21.45 0.30 -61.42 16 2 C 0.02 1.41 5.47 84.65 0.46 1.87 16 3 Si 0.93 45.29 26.94 68.60 1.85 47.14 16 4 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 5 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 6 H -0.16 -6.63 5.17 99.48 0.51 -6.11 16 7 C -0.52 -29.83 9.29 25.60 0.24 -29.59 16 8 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 9 C 0.23 10.32 2.35 43.42 0.10 10.43 16 10 H 0.04 1.88 7.43 -2.39 -0.02 1.86 16 11 N -0.83 -32.88 5.65 -174.95 -0.99 -33.87 16 12 C -0.10 -4.00 4.88 -19.86 -0.10 -4.09 16 13 C -0.13 -4.62 9.29 22.27 0.21 -4.41 16 14 C -0.12 -3.86 9.30 22.27 0.21 -3.65 16 15 C -0.07 -2.10 5.61 -19.86 -0.11 -2.22 16 16 C -0.13 -2.75 6.04 -11.54 -0.07 -2.82 16 17 C -0.18 -3.17 9.86 30.59 0.30 -2.87 16 18 C -0.16 -2.76 10.16 30.59 0.31 -2.45 16 19 C -0.12 -3.60 9.74 22.27 0.22 -3.39 16 20 C -0.13 -4.85 9.67 22.27 0.22 -4.63 16 21 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 22 H 0.33 12.87 7.33 -89.70 -0.66 12.21 16 23 H 0.33 10.88 9.06 -89.69 -0.81 10.07 16 24 H 0.12 4.14 6.65 -2.91 -0.02 4.12 16 25 H 0.14 3.49 6.02 -2.91 -0.02 3.47 16 26 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.78 6.18 -2.39 -0.01 1.76 16 28 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.12 4.19 8.04 -2.91 -0.02 4.16 16 Total: -1.00 -69.07 265.23 2.61 -66.46 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.53 Total: 29.51 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 1.98 Total: -47.83 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -0.69 Total: -95.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -69.07 2.61 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.355 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds