Wall clock time and date at job start Mon Mar 30 2020 03:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00560 * 2 1 4 4 H 1.48496 * 109.47647 * 270.00319 * 3 2 1 5 5 H 1.48508 * 109.47301 * 30.00458 * 3 2 1 6 6 H 1.48506 * 109.47176 * 150.00099 * 3 2 1 7 7 C 1.37884 * 119.99287 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99635 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46691 * 185.15450 * 9 7 2 11 11 N 1.46901 * 115.56421 * 279.56324 * 10 9 7 12 12 C 1.53005 * 117.49661 * 133.87497 * 10 9 7 13 13 C 1.52996 * 117.49983 * 65.25526 * 10 9 7 14 14 H 1.09007 * 117.52011 * 0.02562 * 13 10 9 15 15 C 1.50699 * 117.50120 * 214.97665 * 13 10 9 16 16 C 1.38230 * 120.00246 * 119.98161 * 15 13 10 17 17 C 1.38242 * 120.00276 * 179.97438 * 16 15 13 18 18 C 1.38230 * 119.99493 * 0.02562 * 17 16 15 19 19 C 1.38234 * 120.00278 * 359.96611 * 18 17 16 20 20 C 1.38232 * 119.99837 * 299.96720 * 15 13 10 21 21 H 0.97010 * 119.99316 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.46996 * 65.15740 * 9 7 2 23 23 H 1.08991 * 109.46907 * 305.15483 * 9 7 2 24 24 H 1.00900 * 110.99702 * 320.21256 * 11 10 9 25 25 H 1.00902 * 111.00168 * 84.16493 * 11 10 9 26 26 H 1.09001 * 117.49557 * 145.01751 * 12 10 9 27 27 H 1.08998 * 117.51563 * 359.97438 * 12 10 9 28 28 H 1.08002 * 120.00306 * 359.97438 * 16 15 13 29 29 H 1.07998 * 119.99860 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.99705 * 179.70174 * 18 17 16 31 31 H 1.08008 * 119.99633 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.00333 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0212 -2.6310 -0.1312 11 7 4.0253 -3.4170 1.1098 12 6 5.1431 -2.8941 -1.1378 13 6 3.7205 -3.3719 -1.4356 14 1 3.1599 -2.8359 -2.2016 15 6 3.4512 -4.8521 -1.3490 16 6 2.2393 -5.3604 -1.7777 17 6 1.9924 -6.7183 -1.6988 18 6 2.9574 -7.5677 -1.1906 19 6 4.1693 -7.0594 -0.7621 20 6 4.4162 -5.7016 -0.8412 21 1 -0.4849 0.8402 0.0004 22 1 3.8751 -0.7628 0.9314 23 1 3.8744 -0.6024 -0.8413 24 1 4.3205 -2.8540 1.8934 25 1 3.1197 -3.8279 1.2806 26 1 5.8842 -3.6503 -0.8791 27 1 5.5179 -2.0439 -1.7077 28 1 1.4852 -4.6967 -2.1743 29 1 1.0454 -7.1153 -2.0333 30 1 2.7627 -8.6279 -1.1245 31 1 4.9231 -7.7231 -0.3647 32 1 5.3633 -5.3046 -0.5068 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259924821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:48 Heat of formation + Delta-G solvation = 40.117469 kcal Electronic energy + Delta-G solvation = -14127.293510 eV Core-core repulsion = 11859.854414 eV Total energy + Delta-G solvation = -2267.439096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31235 -37.11644 -32.79451 -31.25817 -30.50993 -29.61168 -28.47265 -23.50332 -22.74099 -21.85282 -20.12500 -18.57986 -16.76060 -16.63756 -15.13024 -14.91421 -14.37675 -14.27440 -13.86224 -13.40968 -13.00256 -12.58627 -12.34719 -12.08700 -11.91554 -11.47394 -10.98168 -10.71410 -10.56867 -10.41561 -10.28532 -9.81511 -9.61647 -9.05916 -8.61440 -8.51165 -8.03831 -7.84537 -6.11056 -4.09620 1.74894 1.81594 3.24769 3.33161 3.35722 4.08492 4.38228 4.65074 4.97540 5.21984 5.25934 5.28064 5.31314 5.51187 5.60385 5.78062 5.92733 6.03019 6.12243 6.29709 6.39963 6.48351 6.57016 6.70336 6.87581 6.91276 7.00070 7.11894 7.20647 7.41645 7.66785 7.91549 8.07446 8.46393 8.94208 9.50835 11.01947 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.007903 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.967307 B = 3541.997595 C = 3919.632871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.003 4.003 10 C 0.091 3.909 11 N -0.809 5.809 12 C -0.176 4.176 13 C -0.107 4.107 14 H 0.113 0.887 15 C -0.028 4.028 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.128 4.128 20 C -0.098 4.098 21 H 0.263 0.737 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.338 0.662 25 H 0.343 0.657 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 -9.906 -2.019 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.002 4.002 11 N -0.337 5.337 12 C -0.214 4.214 13 C -0.126 4.126 14 H 0.131 0.869 15 C -0.028 4.028 16 C -0.133 4.133 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.116 4.116 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.150 0.850 25 H 0.157 0.843 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.218 -10.248 -2.368 13.348 hybrid contribution -0.521 1.653 0.322 1.763 sum 7.697 -8.595 -2.046 11.718 Atomic orbital electron populations 1.69912 1.06254 1.26890 1.50793 1.25019 0.94717 0.99059 0.94576 0.86810 0.80290 0.83814 0.78535 1.20271 1.21375 1.19178 1.21001 0.88865 0.94451 1.51044 0.90890 1.19690 0.97550 0.90154 0.96758 1.21413 0.98963 0.93674 0.86184 1.58710 1.34138 1.36781 1.04099 1.23348 0.91456 1.02688 1.03913 1.21209 0.98954 0.91261 1.01166 0.86948 1.19155 0.93508 0.93586 0.96569 1.21067 0.96832 0.95120 1.00236 1.21033 0.98977 0.93633 1.00656 1.20999 0.94410 0.99116 1.00944 1.21040 0.97154 0.95435 1.00957 1.21019 0.99566 0.92619 0.98390 0.92702 0.96249 0.96255 0.84968 0.84298 0.88945 0.89269 0.86084 0.86686 0.86982 0.86867 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.35 27.37 -169.99 -4.65 16.70 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.26 6.69 56.52 0.38 -5.88 16 7 C -0.52 -14.11 9.44 -34.43 -0.33 -14.43 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 -0.06 4.13 -27.88 -0.12 -0.17 16 10 C 0.09 1.78 2.46 -131.60 -0.32 1.46 16 11 N -0.81 -14.41 8.52 0.74 0.01 -14.40 16 12 C -0.18 -3.01 9.43 -26.73 -0.25 -3.26 16 13 C -0.11 -2.01 5.52 -91.78 -0.51 -2.51 16 14 H 0.11 2.25 8.14 -51.92 -0.42 1.83 16 15 C -0.03 -0.49 5.20 -104.63 -0.54 -1.03 16 16 C -0.11 -1.93 9.74 -39.58 -0.39 -2.31 16 17 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 18 C -0.14 -1.86 10.05 -39.59 -0.40 -2.26 16 19 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 20 C -0.10 -1.53 8.61 -39.59 -0.34 -1.87 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.45 7.48 -51.93 -0.39 0.06 16 23 H 0.02 0.45 7.09 -51.93 -0.37 0.08 16 24 H 0.34 5.70 8.91 -39.29 -0.35 5.35 16 25 H 0.34 6.44 9.01 -39.29 -0.35 6.09 16 26 H 0.09 1.44 6.18 -51.93 -0.32 1.12 16 27 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 28 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.87 6.02 -52.49 -0.32 1.55 16 LS Contribution 270.32 15.07 4.07 4.07 Total: -1.00 -29.30 270.32 -8.09 -37.39 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.21 Total: 11.66 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -4.08 Total: -28.98 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.78 Total: -40.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.70 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.30 -8.09 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.512 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds