Wall clock time and date at job start Mon Mar 30 2020 03:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00560 * 2 1 4 4 H 1.48496 * 109.47647 * 270.00319 * 3 2 1 5 5 H 1.48508 * 109.47301 * 30.00458 * 3 2 1 6 6 H 1.48506 * 109.47176 * 150.00099 * 3 2 1 7 7 C 1.37884 * 119.99287 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99635 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46691 * 185.15450 * 9 7 2 11 11 N 1.46901 * 115.56421 * 279.56324 * 10 9 7 12 12 C 1.53005 * 117.49661 * 133.87497 * 10 9 7 13 13 C 1.52996 * 117.49983 * 65.25526 * 10 9 7 14 14 H 1.09007 * 117.52011 * 0.02562 * 13 10 9 15 15 C 1.50699 * 117.50120 * 214.97665 * 13 10 9 16 16 C 1.38230 * 120.00246 * 119.98161 * 15 13 10 17 17 C 1.38242 * 120.00276 * 179.97438 * 16 15 13 18 18 C 1.38230 * 119.99493 * 0.02562 * 17 16 15 19 19 C 1.38234 * 120.00278 * 359.96611 * 18 17 16 20 20 C 1.38232 * 119.99837 * 299.96720 * 15 13 10 21 21 H 0.97010 * 119.99316 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.46996 * 65.15740 * 9 7 2 23 23 H 1.08991 * 109.46907 * 305.15483 * 9 7 2 24 24 H 1.00900 * 110.99702 * 320.21256 * 11 10 9 25 25 H 1.00902 * 111.00168 * 84.16493 * 11 10 9 26 26 H 1.09001 * 117.49557 * 145.01751 * 12 10 9 27 27 H 1.08998 * 117.51563 * 359.97438 * 12 10 9 28 28 H 1.08002 * 120.00306 * 359.97438 * 16 15 13 29 29 H 1.07998 * 119.99860 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.99705 * 179.70174 * 18 17 16 31 31 H 1.08008 * 119.99633 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.00333 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0212 -2.6310 -0.1312 11 7 4.0253 -3.4170 1.1098 12 6 5.1431 -2.8941 -1.1378 13 6 3.7205 -3.3719 -1.4356 14 1 3.1599 -2.8359 -2.2016 15 6 3.4512 -4.8521 -1.3490 16 6 2.2393 -5.3604 -1.7777 17 6 1.9924 -6.7183 -1.6988 18 6 2.9574 -7.5677 -1.1906 19 6 4.1693 -7.0594 -0.7621 20 6 4.4162 -5.7016 -0.8412 21 1 -0.4849 0.8402 0.0004 22 1 3.8751 -0.7628 0.9314 23 1 3.8744 -0.6024 -0.8413 24 1 4.3205 -2.8540 1.8934 25 1 3.1197 -3.8279 1.2806 26 1 5.8842 -3.6503 -0.8791 27 1 5.5179 -2.0439 -1.7077 28 1 1.4852 -4.6967 -2.1743 29 1 1.0454 -7.1153 -2.0333 30 1 2.7627 -8.6279 -1.1245 31 1 4.9231 -7.7231 -0.3647 32 1 5.3633 -5.3046 -0.5068 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259924821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:48 Heat of formation + Delta-G solvation = 22.045637 kcal Electronic energy + Delta-G solvation = -14128.077163 eV Core-core repulsion = 11859.854414 eV Total energy + Delta-G solvation = -2268.222749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61421 -38.49584 -34.88423 -32.70588 -31.68951 -31.06996 -30.24110 -25.06008 -24.39423 -23.11615 -21.45847 -20.11758 -18.89667 -17.87049 -16.74300 -16.25241 -15.97842 -15.66012 -15.28088 -15.04658 -14.41938 -14.15613 -13.78011 -13.72941 -13.51294 -12.95677 -12.60398 -12.41713 -12.11092 -11.88773 -11.73694 -11.68723 -11.23306 -10.80987 -10.70685 -9.69287 -9.48603 -9.20080 -8.30739 -6.33938 0.55716 0.63852 1.32730 1.34197 1.45459 2.32708 2.82139 3.04178 3.23880 3.57710 3.88015 4.08074 4.17297 4.25983 4.36885 4.40711 4.59692 4.73329 4.83535 4.93805 4.98790 5.10663 5.20131 5.30465 5.31416 5.36260 5.59311 5.71679 5.73073 5.94357 6.22901 6.25575 6.38992 6.62171 6.73073 7.29882 8.85713 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.007903 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.967307 B = 3541.997595 C = 3919.632871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.513 4.513 8 H 0.031 0.969 9 C 0.001 3.999 10 C 0.071 3.929 11 N -0.793 5.793 12 C -0.146 4.146 13 C -0.117 4.117 14 H 0.085 0.915 15 C -0.047 4.047 16 C -0.142 4.142 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.102 4.102 21 H 0.265 0.735 22 H 0.023 0.977 23 H 0.022 0.978 24 H 0.344 0.656 25 H 0.335 0.665 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -10.884 -1.741 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.551 4.551 8 H 0.049 0.951 9 C -0.038 4.038 10 C -0.023 4.023 11 N -0.320 5.320 12 C -0.184 4.184 13 C -0.136 4.136 14 H 0.103 0.897 15 C -0.047 4.047 16 C -0.160 4.160 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.120 4.120 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.157 0.843 25 H 0.147 0.853 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.623 -11.237 -2.088 15.604 hybrid contribution -1.326 1.834 0.223 2.274 sum 9.298 -9.402 -1.865 13.354 Atomic orbital electron populations 1.70072 1.08240 1.27953 1.52790 1.25965 0.95534 1.03270 0.94423 0.85694 0.79449 0.78659 0.79020 1.19440 1.21223 1.17152 1.21225 0.91291 0.92781 1.49810 0.95067 1.19614 0.94407 0.92984 0.96814 1.21281 1.01475 0.92132 0.87418 1.58749 1.33365 1.36136 1.03793 1.23411 0.90707 1.03042 1.01207 1.21138 1.00248 0.92303 0.99869 0.89666 1.19131 0.94375 0.92935 0.98251 1.21108 0.96773 0.96301 1.01852 1.21293 1.00299 0.92714 1.00345 1.21405 0.93688 1.00615 0.99242 1.21430 0.97947 0.95055 0.99795 1.21110 0.99262 0.93331 0.98318 0.92653 0.95867 0.95962 0.84327 0.85250 0.86788 0.88190 0.88156 0.84839 0.83638 0.83724 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 44.09 27.37 68.60 1.88 45.96 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.68 6.69 99.48 0.67 -10.01 16 7 C -0.51 -28.92 9.44 25.60 0.24 -28.68 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 9 C 0.00 0.04 4.13 29.85 0.12 0.17 16 10 C 0.07 2.73 2.46 3.53 0.01 2.74 16 11 N -0.79 -27.61 8.52 -151.56 -1.29 -28.90 16 12 C -0.15 -4.72 9.43 30.59 0.29 -4.43 16 13 C -0.12 -4.43 5.52 -11.54 -0.06 -4.49 16 14 H 0.09 3.61 8.14 -2.38 -0.02 3.60 16 15 C -0.05 -1.62 5.20 -19.87 -0.10 -1.72 16 16 C -0.14 -4.93 9.74 22.27 0.22 -4.71 16 17 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 18 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 19 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 20 C -0.10 -3.00 8.61 22.27 0.19 -2.81 16 21 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 22 H 0.02 1.04 7.48 -2.39 -0.02 1.03 16 23 H 0.02 1.00 7.09 -2.39 -0.02 0.98 16 24 H 0.34 11.16 8.91 -89.69 -0.80 10.37 16 25 H 0.34 12.67 9.01 -89.69 -0.81 11.86 16 26 H 0.11 3.20 6.18 -2.39 -0.01 3.18 16 27 H 0.10 3.00 8.08 -2.39 -0.02 2.99 16 28 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.13 3.57 6.02 -2.91 -0.02 3.55 16 Total: -1.00 -64.51 270.32 2.40 -62.11 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.52 Total: 32.36 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 2.04 Total: -52.40 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -0.99 Total: -88.03 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.96 kcal Total: -64.51 2.40 -62.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.153 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds