Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39429 * 126.64526 * 2 1 4 4 C 1.41270 * 126.15042 * 359.96049 * 3 2 1 5 5 H 1.08004 * 119.99801 * 354.15988 * 4 3 2 6 6 C 1.39726 * 119.99881 * 174.16385 * 4 3 2 7 7 N 1.30971 * 119.99881 * 5.99371 * 6 4 3 8 8 Si 1.86797 * 119.99844 * 185.98959 * 6 4 3 9 9 H 1.48497 * 109.46971 * 94.98120 * 8 6 4 10 10 H 1.48503 * 109.47222 * 214.98236 * 8 6 4 11 11 H 1.48504 * 109.47008 * 334.98371 * 8 6 4 12 12 N 1.34916 * 107.70002 * 179.97438 * 3 2 1 13 13 C 1.31978 * 109.17527 * 0.02562 * 12 3 2 14 14 C 1.41271 * 132.75392 * 180.02562 * 13 12 3 15 15 C 1.35974 * 118.55220 * 179.97438 * 14 13 12 16 16 N 1.33659 * 120.54382 * 0.02562 * 15 14 13 17 17 C 1.30410 * 121.99564 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.45587 * 180.02562 * 17 16 15 19 19 N 1.36072 * 126.64963 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.47080 * 89.97758 * 1 2 3 21 21 H 1.09001 * 109.46621 * 209.97022 * 1 2 3 22 22 H 1.08991 * 109.47258 * 329.97466 * 1 2 3 23 23 H 0.97002 * 119.99617 * 180.02562 * 7 6 4 24 24 H 1.08000 * 120.72252 * 359.94933 * 14 13 12 25 25 H 1.08006 * 119.73034 * 179.97438 * 15 14 13 26 26 H 1.09004 * 109.47537 * 89.99771 * 18 17 16 27 27 H 1.09007 * 109.47037 * 209.99908 * 18 17 16 28 28 H 1.09001 * 109.47231 * 329.99341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3393 1.1187 0.0000 4 6 1.9214 2.4682 -0.0008 5 1 0.8729 2.7088 -0.0966 6 6 2.8647 3.4917 0.1224 7 7 4.1432 3.2076 0.1204 8 14 2.3021 5.2650 0.2897 9 1 2.2399 5.6310 1.7275 10 1 3.2634 6.1571 -0.4070 11 1 0.9558 5.4167 -0.3184 12 7 3.6154 0.6807 0.0006 13 6 3.6207 -0.6391 0.0004 14 6 4.6618 -1.5939 0.0012 15 6 4.3335 -2.9135 0.0012 16 7 3.0525 -3.2947 -0.0001 17 6 2.0747 -2.4317 -0.0009 18 6 0.6508 -2.9251 -0.0017 19 7 2.3193 -1.0917 0.0005 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3632 -0.8903 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 4.7980 3.9181 0.2062 24 1 5.6960 -1.2826 0.0014 25 1 5.1143 -3.6597 0.0014 26 1 0.3067 -3.0440 1.0258 27 1 0.0164 -2.2032 -0.5161 28 1 0.5992 -3.8851 -0.5155 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = 84.248104 kcal Electronic energy + Delta-G solvation = -14200.301076 eV Core-core repulsion = 11831.235285 eV Total energy + Delta-G solvation = -2369.065791 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48063 -37.29150 -33.79932 -33.40242 -30.68099 -29.98686 -28.47225 -26.73060 -24.57676 -21.81299 -21.48878 -19.60114 -17.43915 -16.33959 -15.87636 -15.25006 -14.90024 -14.23017 -13.52135 -12.99755 -12.95982 -12.85887 -12.47950 -12.30837 -11.54520 -11.43461 -11.18292 -11.14186 -10.89700 -10.61867 -10.21706 -9.95937 -9.34305 -9.31649 -8.33911 -7.84178 -6.64244 -6.59216 -4.40767 1.54422 2.36857 3.02529 3.09127 3.12548 3.65565 3.95722 4.07571 4.62449 4.72360 5.27418 5.45481 5.49458 5.65807 5.74649 5.89699 5.98395 6.09752 6.24882 6.40284 6.43052 6.63145 6.66929 7.06173 7.15099 7.35831 7.59671 7.98404 8.29213 8.66452 8.71136 8.88305 9.60277 10.31729 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044145 B = 0.009564 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.119122 B = 2927.062589 C = 3538.176994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.222 4.222 3 C 0.245 3.755 4 C -0.426 4.426 5 H 0.088 0.912 6 C 0.070 3.930 7 N -0.743 5.743 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.261 1.261 12 N -0.466 5.466 13 C 0.218 3.782 14 C -0.153 4.153 15 C 0.045 3.955 16 N -0.523 5.523 17 C 0.292 3.708 18 C -0.096 4.096 19 N -0.367 5.367 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.276 0.724 24 H 0.138 0.862 25 H 0.151 0.849 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 -5.013 0.125 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.334 4.334 3 C 0.120 3.880 4 C -0.459 4.459 5 H 0.107 0.893 6 C -0.153 4.153 7 N -0.366 5.366 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.185 1.185 12 N -0.191 5.191 13 C -0.026 4.026 14 C -0.179 4.179 15 C -0.099 4.099 16 N -0.242 5.242 17 C 0.034 3.966 18 C -0.155 4.155 19 N -0.048 5.048 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.156 0.844 25 H 0.169 0.831 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.393 -5.224 0.130 6.230 hybrid contribution -0.368 1.122 0.105 1.186 sum -3.761 -4.102 0.235 5.570 Atomic orbital electron populations 1.19845 0.88561 1.01188 1.00023 1.21186 0.93080 0.84713 1.34376 1.18426 0.85775 0.92285 0.91478 1.18803 0.94788 0.87690 1.44587 0.89350 1.25981 0.94577 1.01376 0.93399 1.70093 1.01162 1.34264 1.31039 0.86229 0.79651 0.81301 0.79124 1.19520 1.20189 1.18483 1.71543 1.21728 1.01697 1.24109 1.21623 0.82977 0.92602 1.05363 1.20757 0.98285 0.91290 1.07531 1.21691 0.92350 0.94115 1.01710 1.67744 1.00045 1.34508 1.21939 1.22571 0.96886 0.78661 0.98468 1.20857 0.88787 1.02422 1.03412 1.43587 1.10199 1.05455 1.45520 0.93803 0.93416 0.91397 0.91374 0.84391 0.83130 0.90247 0.89581 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.72 8.68 36.01 0.31 -0.41 15 2 C -0.22 -5.37 7.12 -80.26 -0.57 -5.94 15 3 C 0.24 6.79 6.66 -84.91 -0.57 6.22 15 4 C -0.43 -11.35 9.08 -37.87 -0.34 -11.70 15 5 H 0.09 2.16 7.40 -52.48 -0.39 1.77 15 6 C 0.07 1.79 5.48 -17.36 -0.10 1.70 15 7 N -0.74 -20.35 11.95 55.54 0.66 -19.68 15 8 Si 0.91 18.68 29.56 -169.99 -5.03 13.66 15 9 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 12 N -0.47 -13.39 9.53 -10.24 -0.10 -13.49 15 13 C 0.22 5.59 7.83 -155.74 -1.22 4.37 15 14 C -0.15 -3.30 10.17 -39.24 -0.40 -3.69 15 15 C 0.05 0.86 11.16 -17.57 -0.20 0.67 15 16 N -0.52 -10.47 10.26 -10.37 -0.11 -10.57 15 17 C 0.29 5.95 7.74 -154.41 -1.19 4.76 15 18 C -0.10 -1.46 8.95 36.01 0.32 -1.14 15 19 N -0.37 -8.72 2.93 -54.36 -0.16 -8.87 15 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.05 0.76 5.75 -51.93 -0.30 0.46 15 22 H 0.07 1.24 7.64 -51.93 -0.40 0.85 15 23 H 0.28 6.84 8.30 -40.82 -0.34 6.50 15 24 H 0.14 2.67 8.06 -52.49 -0.42 2.25 15 25 H 0.15 2.26 8.06 -52.48 -0.42 1.84 15 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.09 1.26 5.35 -51.93 -0.28 0.98 15 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 LS Contribution 243.40 15.07 3.67 3.67 Total: -1.00 -31.51 243.40 -7.62 -39.13 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -2.61 Total: 1.34 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.95 Total: -5.17 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.30 Total: -52.62 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.51 -7.62 -39.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.374 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds