Wall clock time and date at job start Mon Mar 30 2020 02:41:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35461 * 125.69665 * 2 1
4 4 N 1.36039 * 107.15916 * 180.02562 * 3 2 1
5 5 C 1.36676 * 133.73228 * 180.02562 * 4 3 2
6 6 C 1.35000 * 119.74890 * 179.97438 * 5 4 3
7 7 N 1.33524 * 121.24693 * 0.02562 * 6 5 4
8 8 C 1.31130 * 121.37112 * 0.02562 * 7 6 5
9 9 C 1.50704 * 120.14778 * 179.97438 * 8 7 6
10 10 C 1.50696 * 109.47016 * 89.99564 * 9 8 7
11 11 H 1.08001 * 120.00316 * 0.02562 * 10 9 8
12 12 C 1.37883 * 119.99794 * 179.97438 * 10 9 8
13 13 N 1.31507 * 120.00166 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99971 * 180.02562 * 12 10 9
15 15 H 1.48505 * 109.47280 * 0.02562 * 14 12 10
16 16 H 1.48502 * 109.47251 * 120.00281 * 14 12 10
17 17 H 1.48497 * 109.47313 * 240.00430 * 14 12 10
18 18 C 1.37390 * 107.12070 * 359.97438 * 4 3 2
19 19 N 1.32310 * 107.97191 * 359.97438 * 18 4 3
20 20 H 1.09000 * 109.47597 * 269.95815 * 1 2 3
21 21 H 1.09006 * 109.47165 * 29.95388 * 1 2 3
22 22 H 1.08998 * 109.47317 * 149.95178 * 1 2 3
23 23 H 1.07994 * 126.41890 * 0.03301 * 3 2 1
24 24 H 1.08004 * 120.13089 * 359.95797 * 5 4 3
25 25 H 1.08005 * 119.38080 * 180.02562 * 6 5 4
26 26 H 1.08998 * 109.47114 * 209.99779 * 9 8 7
27 27 H 1.09002 * 109.47112 * 329.99767 * 9 8 7
28 28 H 0.97001 * 120.00455 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2973 1.1001 0.0000
4 7 3.5871 0.6676 -0.0006
5 6 4.7969 1.3036 -0.0004
6 6 5.9352 0.5778 -0.0006
7 7 5.9056 -0.7571 -0.0015
8 6 4.7710 -1.4147 -0.0027
9 6 4.7697 -2.9217 -0.0043
10 6 4.7687 -3.4255 1.4160
11 1 4.7686 -2.7246 2.2376
12 6 4.7669 -4.7814 1.6665
13 7 4.7665 -5.6349 0.6660
14 14 4.7650 -5.4059 3.4270
15 1 4.7651 -4.2519 4.3616
16 1 3.5513 -6.2297 3.6587
17 1 5.9763 -6.2325 3.6603
18 6 3.5532 -0.7059 -0.0003
19 7 2.2849 -1.0829 0.0009
20 1 -0.3634 -0.0008 1.0276
21 1 -0.3634 0.8904 -0.5131
22 1 -0.3634 -0.8895 -0.5146
23 1 1.9657 2.1279 0.0005
24 1 4.8422 2.3827 -0.0004
25 1 6.8880 1.0865 -0.0001
26 1 3.8796 -3.2837 -0.5189
27 1 5.6596 -3.2853 -0.5182
28 1 4.7656 -6.5888 0.8422
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259958408.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:52
Heat of formation + Delta-G solvation = 92.495963 kcal
Electronic energy + Delta-G solvation = -13881.795458 eV
Core-core repulsion = 11513.087321 eV
Total energy + Delta-G solvation = -2368.708137 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.60227 -38.08848 -34.53207 -32.87193 -31.63010 -29.77278 -28.23967 -26.93386
-23.90855 -22.86392 -21.49495 -20.19942 -17.86226 -16.69469 -16.40760 -15.64147
-15.11800 -14.63179 -14.14293 -13.68721 -13.24042 -12.86736 -12.46997 -12.29703
-11.98693 -11.68225 -11.31817 -10.94922 -10.64765 -10.60694 -9.96226 -9.69680
-9.36015 -9.12416 -8.38495 -8.31305 -7.61567 -6.00987 -4.03358 1.08302
1.66949 2.85277 3.16216 3.34781 3.41186 3.46475 4.12485 4.48761
4.50986 4.65202 4.74558 5.02567 5.34274 5.37190 5.40473 5.61765
5.80429 5.84719 5.93571 6.10869 6.34379 6.81117 6.93322 7.22873
7.50768 7.55384 7.92051 8.20458 8.25887 8.50861 8.95836 9.57936
11.09907
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.028692 B = 0.009451 C = 0.007897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 975.659594 B = 2962.093443 C = 3544.580648
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C 0.046 3.954
3 C -0.100 4.100
4 N -0.345 5.345
5 C -0.051 4.051
6 C 0.061 3.939
7 N -0.491 5.491
8 C 0.276 3.724
9 C 0.066 3.934
10 C -0.501 4.501
11 H 0.054 0.946
12 C 0.063 3.937
13 N -0.891 5.891
14 Si 0.900 3.100
15 H -0.274 1.274
16 H -0.282 1.282
17 H -0.282 1.282
18 C 0.171 3.829
19 N -0.442 5.442
20 H 0.072 0.928
21 H 0.068 0.932
22 H 0.075 0.925
23 H 0.178 0.822
24 H 0.160 0.840
25 H 0.169 0.831
26 H 0.053 0.947
27 H 0.050 0.950
28 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.976 14.021 -1.772 14.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.091 4.091
3 C -0.236 4.236
4 N -0.017 5.017
5 C -0.174 4.174
6 C -0.079 4.079
7 N -0.204 5.204
8 C 0.116 3.884
9 C 0.028 3.972
10 C -0.540 4.540
11 H 0.072 0.928
12 C -0.139 4.139
13 N -0.530 5.530
14 Si 0.728 3.272
15 H -0.199 1.199
16 H -0.208 1.208
17 H -0.208 1.208
18 C -0.074 4.074
19 N -0.164 5.164
20 H 0.090 0.910
21 H 0.087 0.913
22 H 0.094 0.906
23 H 0.195 0.805
24 H 0.177 0.823
25 H 0.186 0.814
26 H 0.072 0.928
27 H 0.068 0.932
28 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.330 12.840 -1.820 13.389
hybrid contribution -0.417 1.263 1.015 1.673
sum -3.747 14.102 -0.805 14.614
Atomic orbital electron populations
1.20083 0.87032 1.02846 1.02565 1.21081 0.96939 0.88047 1.02993
1.22275 0.81084 1.00803 1.19408 1.42780 1.05959 1.09357 1.43604
1.22250 0.83384 0.99618 1.12185 1.22238 0.97016 0.90556 0.98056
1.68310 1.27954 1.07516 1.16615 1.22597 0.82173 0.99793 0.83805
1.18425 1.00077 0.79572 0.99155 1.20764 1.51471 0.91553 0.90213
0.92789 1.24903 0.95006 0.96563 0.97431 1.69948 1.50238 1.02208
1.30557 0.86406 0.77620 0.78788 0.84429 1.19863 1.20810 1.20848
1.22098 0.95923 0.80288 1.09047 1.70542 0.98205 1.28645 1.18976
0.90972 0.91264 0.90586 0.80467 0.82264 0.81380 0.92850 0.93185
0.92752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.84 10.42 36.00 0.38 -0.47 15
2 C 0.05 0.80 7.06 -82.93 -0.59 0.22 15
3 C -0.10 -1.55 11.69 -16.68 -0.20 -1.75 15
4 N -0.35 -6.27 2.95 -62.70 -0.19 -6.45 15
5 C -0.05 -0.76 11.04 -16.54 -0.18 -0.94 15
6 C 0.06 0.99 11.07 -17.97 -0.20 0.80 15
7 N -0.49 -10.57 10.35 -9.36 -0.10 -10.67 15
8 C 0.28 6.58 6.05 -81.88 -0.50 6.08 15
9 C 0.07 1.78 5.30 -29.04 -0.15 1.63 15
10 C -0.50 -14.58 9.09 -34.44 -0.31 -14.90 15
11 H 0.05 1.59 7.74 -52.49 -0.41 1.18 15
12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 15
13 N -0.89 -26.65 13.29 55.43 0.74 -25.91 15
14 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 15
15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15
16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15
17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15
18 C 0.17 3.83 7.54 -155.97 -1.18 2.65 15
19 N -0.44 -9.87 11.30 -8.95 -0.10 -9.97 15
20 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15
21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15
22 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15
23 H 0.18 1.93 8.06 -52.49 -0.42 1.51 15
24 H 0.16 1.64 8.06 -52.48 -0.42 1.21 15
25 H 0.17 2.00 8.06 -52.48 -0.42 1.58 15
26 H 0.05 1.52 8.10 -51.93 -0.42 1.10 15
27 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15
28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15
LS Contribution 254.36 15.07 3.83 3.83
Total: -1.00 -33.58 254.36 -6.78 -40.36
By element:
Atomic # 1 Polarization: -0.45 SS G_CDS: -2.92 Total: -3.37 kcal
Atomic # 6 Polarization: -1.94 SS G_CDS: -3.02 Total: -4.96 kcal
Atomic # 7 Polarization: -53.36 SS G_CDS: 0.35 Total: -53.01 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 3.83 Total: 3.83 kcal
Total: -33.58 -6.78 -40.36 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259958408.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.853 kcal
(2) G-P(sol) polarization free energy of solvation -33.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds