Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35461 * 125.69665 * 2 1 4 4 N 1.36039 * 107.15916 * 180.02562 * 3 2 1 5 5 C 1.36676 * 133.73228 * 180.02562 * 4 3 2 6 6 C 1.35000 * 119.74890 * 179.97438 * 5 4 3 7 7 N 1.33524 * 121.24693 * 0.02562 * 6 5 4 8 8 C 1.31130 * 121.37112 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.14778 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47016 * 89.99564 * 9 8 7 11 11 H 1.08001 * 120.00316 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99794 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00166 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99971 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47280 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47251 * 120.00281 * 14 12 10 17 17 H 1.48497 * 109.47313 * 240.00430 * 14 12 10 18 18 C 1.37390 * 107.12070 * 359.97438 * 4 3 2 19 19 N 1.32310 * 107.97191 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.47597 * 269.95815 * 1 2 3 21 21 H 1.09006 * 109.47165 * 29.95388 * 1 2 3 22 22 H 1.08998 * 109.47317 * 149.95178 * 1 2 3 23 23 H 1.07994 * 126.41890 * 0.03301 * 3 2 1 24 24 H 1.08004 * 120.13089 * 359.95797 * 5 4 3 25 25 H 1.08005 * 119.38080 * 180.02562 * 6 5 4 26 26 H 1.08998 * 109.47114 * 209.99779 * 9 8 7 27 27 H 1.09002 * 109.47112 * 329.99767 * 9 8 7 28 28 H 0.97001 * 120.00455 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2973 1.1001 0.0000 4 7 3.5871 0.6676 -0.0006 5 6 4.7969 1.3036 -0.0004 6 6 5.9352 0.5778 -0.0006 7 7 5.9056 -0.7571 -0.0015 8 6 4.7710 -1.4147 -0.0027 9 6 4.7697 -2.9217 -0.0043 10 6 4.7687 -3.4255 1.4160 11 1 4.7686 -2.7246 2.2376 12 6 4.7669 -4.7814 1.6665 13 7 4.7665 -5.6349 0.6660 14 14 4.7650 -5.4059 3.4270 15 1 4.7651 -4.2519 4.3616 16 1 3.5513 -6.2297 3.6587 17 1 5.9763 -6.2325 3.6603 18 6 3.5532 -0.7059 -0.0003 19 7 2.2849 -1.0829 0.0009 20 1 -0.3634 -0.0008 1.0276 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3634 -0.8895 -0.5146 23 1 1.9657 2.1279 0.0005 24 1 4.8422 2.3827 -0.0004 25 1 6.8880 1.0865 -0.0001 26 1 3.8796 -3.2837 -0.5189 27 1 5.6596 -3.2853 -0.5182 28 1 4.7656 -6.5888 0.8422 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958408.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = 69.576558 kcal Electronic energy + Delta-G solvation = -13882.789318 eV Core-core repulsion = 11513.087321 eV Total energy + Delta-G solvation = -2369.701997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.98824 -39.52799 -36.19641 -34.79728 -33.07115 -31.34425 -29.79758 -28.39118 -25.79851 -24.28920 -23.14693 -21.52723 -19.25789 -18.63897 -18.11084 -17.12490 -16.66864 -16.28004 -15.53518 -15.02352 -14.64794 -14.25187 -14.12507 -13.78409 -13.44845 -13.24521 -13.04123 -12.69173 -12.62114 -12.29593 -12.01683 -11.46851 -11.13458 -10.66602 -10.59519 -9.67674 -8.98920 -8.22211 -6.34600 -0.35444 0.26942 1.37598 1.39629 1.51942 1.55830 1.87807 2.37203 2.66415 3.08736 3.11030 3.35613 3.47431 3.82864 4.23158 4.28972 4.34734 4.54565 4.86075 4.87570 4.92141 5.10632 5.21472 5.31521 5.45887 5.63627 5.68966 5.96945 6.06376 6.70561 6.83402 7.02495 7.31196 8.88889 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.009451 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.659594 B = 2962.093443 C = 3544.580648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.027 3.973 3 C -0.076 4.076 4 N -0.348 5.348 5 C -0.017 4.017 6 C 0.033 3.967 7 N -0.507 5.507 8 C 0.229 3.771 9 C 0.081 3.919 10 C -0.519 4.519 11 H 0.042 0.958 12 C 0.010 3.990 13 N -0.925 5.925 14 Si 0.971 3.029 15 H -0.271 1.271 16 H -0.273 1.273 17 H -0.269 1.269 18 C 0.135 3.865 19 N -0.500 5.500 20 H 0.082 0.918 21 H 0.110 0.890 22 H 0.062 0.938 23 H 0.237 0.763 24 H 0.225 0.775 25 H 0.215 0.785 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 17.525 -0.762 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.211 4.211 4 N -0.020 5.020 5 C -0.140 4.140 6 C -0.105 4.105 7 N -0.221 5.221 8 C 0.069 3.931 9 C 0.043 3.957 10 C -0.558 4.558 11 H 0.061 0.939 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.198 1.198 17 H -0.194 1.194 18 C -0.109 4.109 19 N -0.223 5.223 20 H 0.101 0.899 21 H 0.129 0.871 22 H 0.081 0.919 23 H 0.254 0.746 24 H 0.241 0.759 25 H 0.232 0.768 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.938 16.344 -0.818 16.831 hybrid contribution -0.272 0.386 0.637 0.793 sum -4.210 16.730 -0.181 17.253 Atomic orbital electron populations 1.20252 0.84015 1.04278 1.03666 1.22005 0.99018 0.87592 1.02255 1.23207 0.79388 1.02629 1.15845 1.43133 1.07908 1.08016 1.42993 1.23243 0.81614 1.02196 1.06898 1.22991 0.99908 0.88591 0.99055 1.68083 1.27636 1.10745 1.15591 1.21723 0.84141 0.98161 0.89029 1.17905 0.96886 0.83299 0.97653 1.20987 1.51816 0.91993 0.91003 0.93937 1.25855 0.94247 0.96623 1.02168 1.70066 1.50743 1.02690 1.32946 0.85323 0.78323 0.78213 0.78679 1.19578 1.19786 1.19401 1.21692 0.95290 0.82462 1.11412 1.70476 0.99237 1.31683 1.20947 0.89899 0.87150 0.91853 0.74627 0.75864 0.76847 0.96281 0.96097 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.42 71.23 0.74 -0.72 15 2 C 0.03 0.89 7.06 41.69 0.29 1.19 15 3 C -0.08 -2.03 11.69 83.40 0.98 -1.06 15 4 N -0.35 -11.69 2.95 -352.28 -1.04 -12.73 15 5 C -0.02 -0.42 11.04 83.19 0.92 0.49 15 6 C 0.03 1.01 11.07 83.69 0.93 1.93 15 7 N -0.51 -22.29 10.35 -183.53 -1.90 -24.19 15 8 C 0.23 11.53 6.05 43.32 0.26 11.79 15 9 C 0.08 4.77 5.30 29.10 0.15 4.92 15 10 C -0.52 -32.06 9.09 25.60 0.23 -31.83 15 11 H 0.04 2.64 7.74 -2.91 -0.02 2.62 15 12 C 0.01 0.59 5.46 84.66 0.46 1.05 15 13 N -0.93 -57.91 13.29 21.45 0.28 -57.62 15 14 Si 0.97 46.65 29.54 68.60 2.03 48.68 15 15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 18 C 0.13 6.16 7.54 134.07 1.01 7.17 15 19 N -0.50 -23.02 11.30 -182.22 -2.06 -25.08 15 20 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.11 1.56 8.14 -2.38 -0.02 1.54 15 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.24 3.35 8.06 -2.91 -0.02 3.33 15 24 H 0.22 2.80 8.06 -2.91 -0.02 2.77 15 25 H 0.22 4.22 8.06 -2.91 -0.02 4.19 15 26 H 0.02 1.21 8.10 -2.39 -0.02 1.19 15 27 H 0.02 1.29 8.14 -2.39 -0.02 1.27 15 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 Total: -1.00 -81.05 254.36 4.45 -76.60 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.16 Total: -0.59 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.98 Total: -5.05 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.71 Total: -119.63 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -81.05 4.45 -76.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958408.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.174 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds