Wall clock time and date at job start Mon Mar 30 2020 02:41:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35461 * 125.69665 * 2 1
4 4 N 1.36039 * 107.15916 * 180.02562 * 3 2 1
5 5 C 1.36676 * 133.73228 * 180.02562 * 4 3 2
6 6 C 1.35000 * 119.74890 * 179.97438 * 5 4 3
7 7 N 1.33524 * 121.24693 * 0.02562 * 6 5 4
8 8 C 1.31130 * 121.37112 * 0.02562 * 7 6 5
9 9 C 1.50704 * 120.14778 * 179.97438 * 8 7 6
10 10 C 1.50696 * 109.47016 * 89.99564 * 9 8 7
11 11 H 1.08001 * 120.00316 * 0.02562 * 10 9 8
12 12 C 1.37883 * 119.99794 * 179.97438 * 10 9 8
13 13 N 1.31507 * 120.00166 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99971 * 180.02562 * 12 10 9
15 15 H 1.48505 * 109.47280 * 0.02562 * 14 12 10
16 16 H 1.48502 * 109.47251 * 120.00281 * 14 12 10
17 17 H 1.48497 * 109.47313 * 240.00430 * 14 12 10
18 18 C 1.37390 * 107.12070 * 359.97438 * 4 3 2
19 19 N 1.32310 * 107.97191 * 359.97438 * 18 4 3
20 20 H 1.09000 * 109.47597 * 269.95815 * 1 2 3
21 21 H 1.09006 * 109.47165 * 29.95388 * 1 2 3
22 22 H 1.08998 * 109.47317 * 149.95178 * 1 2 3
23 23 H 1.07994 * 126.41890 * 0.03301 * 3 2 1
24 24 H 1.08004 * 120.13089 * 359.95797 * 5 4 3
25 25 H 1.08005 * 119.38080 * 180.02562 * 6 5 4
26 26 H 1.08998 * 109.47114 * 209.99779 * 9 8 7
27 27 H 1.09002 * 109.47112 * 329.99767 * 9 8 7
28 28 H 0.97001 * 120.00455 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2973 1.1001 0.0000
4 7 3.5871 0.6676 -0.0006
5 6 4.7969 1.3036 -0.0004
6 6 5.9352 0.5778 -0.0006
7 7 5.9056 -0.7571 -0.0015
8 6 4.7710 -1.4147 -0.0027
9 6 4.7697 -2.9217 -0.0043
10 6 4.7687 -3.4255 1.4160
11 1 4.7686 -2.7246 2.2376
12 6 4.7669 -4.7814 1.6665
13 7 4.7665 -5.6349 0.6660
14 14 4.7650 -5.4059 3.4270
15 1 4.7651 -4.2519 4.3616
16 1 3.5513 -6.2297 3.6587
17 1 5.9763 -6.2325 3.6603
18 6 3.5532 -0.7059 -0.0003
19 7 2.2849 -1.0829 0.0009
20 1 -0.3634 -0.0008 1.0276
21 1 -0.3634 0.8904 -0.5131
22 1 -0.3634 -0.8895 -0.5146
23 1 1.9657 2.1279 0.0005
24 1 4.8422 2.3827 -0.0004
25 1 6.8880 1.0865 -0.0001
26 1 3.8796 -3.2837 -0.5189
27 1 5.6596 -3.2853 -0.5182
28 1 4.7656 -6.5888 0.8422
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259958408.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:52
Heat of formation + Delta-G solvation = 69.576558 kcal
Electronic energy + Delta-G solvation = -13882.789318 eV
Core-core repulsion = 11513.087321 eV
Total energy + Delta-G solvation = -2369.701997 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-43.98824 -39.52799 -36.19641 -34.79728 -33.07115 -31.34425 -29.79758 -28.39118
-25.79851 -24.28920 -23.14693 -21.52723 -19.25789 -18.63897 -18.11084 -17.12490
-16.66864 -16.28004 -15.53518 -15.02352 -14.64794 -14.25187 -14.12507 -13.78409
-13.44845 -13.24521 -13.04123 -12.69173 -12.62114 -12.29593 -12.01683 -11.46851
-11.13458 -10.66602 -10.59519 -9.67674 -8.98920 -8.22211 -6.34600 -0.35444
0.26942 1.37598 1.39629 1.51942 1.55830 1.87807 2.37203 2.66415
3.08736 3.11030 3.35613 3.47431 3.82864 4.23158 4.28972 4.34734
4.54565 4.86075 4.87570 4.92141 5.10632 5.21472 5.31521 5.45887
5.63627 5.68966 5.96945 6.06376 6.70561 6.83402 7.02495 7.31196
8.88889
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.028692 B = 0.009451 C = 0.007897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 975.659594 B = 2962.093443 C = 3544.580648
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C 0.027 3.973
3 C -0.076 4.076
4 N -0.348 5.348
5 C -0.017 4.017
6 C 0.033 3.967
7 N -0.507 5.507
8 C 0.229 3.771
9 C 0.081 3.919
10 C -0.519 4.519
11 H 0.042 0.958
12 C 0.010 3.990
13 N -0.925 5.925
14 Si 0.971 3.029
15 H -0.271 1.271
16 H -0.273 1.273
17 H -0.269 1.269
18 C 0.135 3.865
19 N -0.500 5.500
20 H 0.082 0.918
21 H 0.110 0.890
22 H 0.062 0.938
23 H 0.237 0.763
24 H 0.225 0.775
25 H 0.215 0.785
26 H 0.019 0.981
27 H 0.021 0.979
28 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.583 17.525 -0.762 18.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.109 4.109
3 C -0.211 4.211
4 N -0.020 5.020
5 C -0.140 4.140
6 C -0.105 4.105
7 N -0.221 5.221
8 C 0.069 3.931
9 C 0.043 3.957
10 C -0.558 4.558
11 H 0.061 0.939
12 C -0.189 4.189
13 N -0.564 5.564
14 Si 0.795 3.205
15 H -0.196 1.196
16 H -0.198 1.198
17 H -0.194 1.194
18 C -0.109 4.109
19 N -0.223 5.223
20 H 0.101 0.899
21 H 0.129 0.871
22 H 0.081 0.919
23 H 0.254 0.746
24 H 0.241 0.759
25 H 0.232 0.768
26 H 0.037 0.963
27 H 0.039 0.961
28 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -3.938 16.344 -0.818 16.831
hybrid contribution -0.272 0.386 0.637 0.793
sum -4.210 16.730 -0.181 17.253
Atomic orbital electron populations
1.20252 0.84015 1.04278 1.03666 1.22005 0.99018 0.87592 1.02255
1.23207 0.79388 1.02629 1.15845 1.43133 1.07908 1.08016 1.42993
1.23243 0.81614 1.02196 1.06898 1.22991 0.99908 0.88591 0.99055
1.68083 1.27636 1.10745 1.15591 1.21723 0.84141 0.98161 0.89029
1.17905 0.96886 0.83299 0.97653 1.20987 1.51816 0.91993 0.91003
0.93937 1.25855 0.94247 0.96623 1.02168 1.70066 1.50743 1.02690
1.32946 0.85323 0.78323 0.78213 0.78679 1.19578 1.19786 1.19401
1.21692 0.95290 0.82462 1.11412 1.70476 0.99237 1.31683 1.20947
0.89899 0.87150 0.91853 0.74627 0.75864 0.76847 0.96281 0.96097
0.92260
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.46 10.42 71.23 0.74 -0.72 15
2 C 0.03 0.89 7.06 41.69 0.29 1.19 15
3 C -0.08 -2.03 11.69 83.40 0.98 -1.06 15
4 N -0.35 -11.69 2.95 -352.28 -1.04 -12.73 15
5 C -0.02 -0.42 11.04 83.19 0.92 0.49 15
6 C 0.03 1.01 11.07 83.69 0.93 1.93 15
7 N -0.51 -22.29 10.35 -183.53 -1.90 -24.19 15
8 C 0.23 11.53 6.05 43.32 0.26 11.79 15
9 C 0.08 4.77 5.30 29.10 0.15 4.92 15
10 C -0.52 -32.06 9.09 25.60 0.23 -31.83 15
11 H 0.04 2.64 7.74 -2.91 -0.02 2.62 15
12 C 0.01 0.59 5.46 84.66 0.46 1.05 15
13 N -0.93 -57.91 13.29 21.45 0.28 -57.62 15
14 Si 0.97 46.65 29.54 68.60 2.03 48.68 15
15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15
16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15
17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15
18 C 0.13 6.16 7.54 134.07 1.01 7.17 15
19 N -0.50 -23.02 11.30 -182.22 -2.06 -25.08 15
20 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15
21 H 0.11 1.56 8.14 -2.38 -0.02 1.54 15
22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15
23 H 0.24 3.35 8.06 -2.91 -0.02 3.33 15
24 H 0.22 2.80 8.06 -2.91 -0.02 2.77 15
25 H 0.22 4.22 8.06 -2.91 -0.02 4.19 15
26 H 0.02 1.21 8.10 -2.39 -0.02 1.19 15
27 H 0.02 1.29 8.14 -2.39 -0.02 1.27 15
28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15
Total: -1.00 -81.05 254.36 4.45 -76.60
By element:
Atomic # 1 Polarization: -1.75 SS G_CDS: 1.16 Total: -0.59 kcal
Atomic # 6 Polarization: -11.03 SS G_CDS: 5.98 Total: -5.05 kcal
Atomic # 7 Polarization: -114.91 SS G_CDS: -4.71 Total: -119.63 kcal
Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal
Total: -81.05 4.45 -76.60 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259958408.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.174 kcal
(2) G-P(sol) polarization free energy of solvation -81.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds