Wall clock time and date at job start Mon Mar 30 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36824 * 120.00143 * 2 1 4 4 H 1.07999 * 120.00296 * 203.09240 * 3 2 1 5 5 C 1.38831 * 120.00029 * 23.08661 * 3 2 1 6 6 N 1.31562 * 119.99497 * 12.89849 * 5 3 2 7 7 Si 1.86790 * 119.99926 * 192.90015 * 5 3 2 8 8 H 1.48495 * 109.47335 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47232 * 120.00203 * 7 5 3 10 10 H 1.48500 * 109.47067 * 239.99806 * 7 5 3 11 11 C 1.38935 * 119.99882 * 180.02562 * 2 1 3 12 12 C 1.39325 * 120.94342 * 90.01952 * 11 2 1 13 13 C 1.38320 * 119.54876 * 179.97438 * 12 11 2 14 14 N 1.31676 * 121.38614 * 359.57852 * 13 12 11 15 15 C 1.33182 * 121.60903 * 0.67188 * 14 13 12 16 16 C 1.46417 * 133.70504 * 179.19587 * 15 14 13 17 17 C 1.34397 * 107.07438 * 180.02562 * 16 15 14 18 18 N 1.36578 * 109.88171 * 359.97438 * 17 16 15 19 19 H 0.97006 * 125.10020 * 179.97438 * 18 17 16 20 20 C 1.37603 * 109.79896 * 0.26853 * 18 17 16 21 21 H 1.09001 * 109.46620 * 275.11900 * 1 2 3 22 22 H 1.08998 * 109.47214 * 35.11863 * 1 2 3 23 23 H 1.08997 * 109.47128 * 155.11938 * 1 2 3 24 24 H 0.97006 * 119.99782 * 179.97438 * 6 5 3 25 25 H 1.08006 * 120.22293 * 359.95487 * 12 11 2 26 26 H 1.08008 * 119.30801 * 179.97438 * 13 12 11 27 27 H 1.08002 * 126.46146 * 0.05472 * 16 15 14 28 28 H 1.07999 * 125.05619 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1643 1.2224 -0.3668 5 6 1.5385 2.3391 0.4715 6 7 0.4122 2.2585 1.1465 7 14 2.3159 4.0063 0.1472 8 1 3.5699 3.8255 -0.6274 9 1 1.3718 4.8504 -0.6282 10 1 2.6245 4.6684 1.4401 11 6 2.1597 -1.2032 -0.0005 12 6 2.5183 -1.8229 -1.1958 13 6 3.2101 -3.0202 -1.1626 14 7 3.5465 -3.5866 -0.0225 15 6 3.2255 -3.0410 1.1493 16 6 3.4433 -3.4355 2.5424 17 6 2.8906 -2.4833 3.3132 18 7 2.3379 -1.5125 2.5275 19 1 1.8809 -0.7223 2.8557 20 6 2.5208 -1.8268 1.2003 21 1 -0.3632 0.0917 1.0236 22 1 -0.3633 0.8406 -0.5912 23 1 -0.3633 -0.9323 -0.4324 24 1 -0.0144 3.0649 1.4763 25 1 2.2575 -1.3716 -2.1417 26 1 3.4857 -3.4974 -2.0915 27 1 3.9526 -4.3238 2.8858 28 1 2.8844 -2.4856 4.3932 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989776.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:54 Heat of formation + Delta-G solvation = 92.785252 kcal Electronic energy + Delta-G solvation = -14223.683201 eV Core-core repulsion = 11854.987608 eV Total energy + Delta-G solvation = -2368.695593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77332 -37.27184 -35.78007 -32.09805 -30.16457 -28.78934 -28.62911 -26.09845 -23.91944 -21.97482 -21.32872 -19.76514 -17.59754 -16.89330 -16.03559 -15.52415 -14.53497 -14.20334 -14.09016 -13.46474 -13.07472 -12.76394 -12.44605 -12.15698 -11.82148 -11.52126 -11.10974 -11.06295 -10.74886 -10.25573 -10.17460 -9.20650 -8.83099 -8.73071 -7.74645 -7.33291 -7.15751 -5.98757 -3.50581 1.71725 2.14445 3.20856 3.25163 3.33145 3.36362 3.76712 4.30121 4.67067 4.82871 5.14952 5.20457 5.48227 5.66634 5.74088 5.95288 6.24831 6.30096 6.42218 6.58487 6.89345 6.98583 7.16425 7.30039 7.47837 7.58954 7.68554 8.08262 8.22810 8.76305 8.97735 9.65970 10.05383 11.05867 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.010052 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.051905 B = 2784.721188 C = 3080.154597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.568 5.568 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.011 3.989 6 N -0.904 5.904 7 Si 0.911 3.089 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.288 1.288 11 C 0.252 3.748 12 C -0.193 4.193 13 C 0.094 3.906 14 N -0.480 5.480 15 C 0.080 3.920 16 C -0.211 4.211 17 C 0.060 3.940 18 N -0.572 5.572 19 H 0.424 0.576 20 C 0.037 3.963 21 H 0.035 0.965 22 H 0.050 0.950 23 H 0.004 0.996 24 H 0.256 0.744 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -6.496 1.459 6.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.287 5.287 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.189 4.189 6 N -0.547 5.547 7 Si 0.740 3.260 8 H -0.200 1.200 9 H -0.212 1.212 10 H -0.215 1.215 11 C 0.147 3.853 12 C -0.217 4.217 13 C -0.074 4.074 14 N -0.189 5.189 15 C -0.051 4.051 16 C -0.238 4.238 17 C -0.071 4.071 18 N -0.173 5.173 19 H 0.262 0.738 20 C -0.075 4.075 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.148 0.852 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.258 -6.990 1.654 7.530 hybrid contribution -0.339 2.204 0.082 2.232 sum 1.919 -4.786 1.736 5.441 Atomic orbital electron populations 1.20903 0.80813 0.96310 0.99984 1.41358 1.02243 0.99217 1.85844 1.19219 0.98743 0.84351 1.36814 0.90973 1.25057 0.97605 0.98818 0.97398 1.70047 1.19144 1.27751 1.37790 0.86083 0.78777 0.83416 0.77706 1.20037 1.21217 1.21491 1.17255 0.91915 0.87585 0.88540 1.22388 1.03145 0.97638 0.98557 1.22291 0.96749 0.93186 0.95127 1.67052 1.20840 1.34083 0.96950 1.19978 0.99976 0.92631 0.92561 1.21325 1.10940 1.02373 0.89166 1.21829 0.98803 0.89774 0.96667 1.41670 1.49277 1.22075 1.04240 0.73780 1.20347 1.03291 0.97655 0.86249 0.94624 0.93159 0.97755 0.93368 0.85201 0.83615 0.83837 0.81423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.96 59.85 0.54 4.45 15 2 N -0.57 -14.07 2.97 -120.23 -0.36 -14.42 15 3 C -0.26 -7.04 9.63 -15.10 -0.15 -7.19 15 4 H 0.07 1.96 7.86 -52.49 -0.41 1.55 15 5 C 0.01 0.28 5.10 -17.45 -0.09 0.19 15 6 N -0.90 -24.59 10.70 55.49 0.59 -24.00 15 7 Si 0.91 21.06 29.57 -169.99 -5.03 16.03 15 8 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 11 C 0.25 5.74 5.07 -83.56 -0.42 5.31 15 12 C -0.19 -3.87 10.04 -39.15 -0.39 -4.26 15 13 C 0.09 1.72 11.15 -17.59 -0.20 1.52 15 14 N -0.48 -9.71 10.42 -9.95 -0.10 -9.81 15 15 C 0.08 1.65 7.51 -83.14 -0.62 1.03 15 16 C -0.21 -3.57 11.08 -37.65 -0.42 -3.98 15 17 C 0.06 0.92 11.82 -16.79 -0.20 0.72 15 18 N -0.57 -10.80 6.06 -10.52 -0.06 -10.86 15 19 H 0.42 8.09 8.96 -40.82 -0.37 7.73 15 20 C 0.04 0.81 7.24 -83.75 -0.61 0.20 15 21 H 0.04 0.90 7.34 -51.93 -0.38 0.52 15 22 H 0.05 1.27 7.34 -51.93 -0.38 0.88 15 23 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 15 24 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 25 H 0.13 2.41 8.06 -52.48 -0.42 1.99 15 26 H 0.15 2.11 8.06 -52.48 -0.42 1.68 15 27 H 0.14 2.04 8.06 -52.49 -0.42 1.62 15 28 H 0.17 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 248.70 15.07 3.75 3.75 Total: -1.00 -29.76 248.70 -6.55 -36.31 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.78 Total: 5.00 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.56 Total: -2.00 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.07 Total: -59.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.76 -6.55 -36.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989776.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.096 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds