Wall clock time and date at job start Mon Mar 30 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36824 * 120.00143 * 2 1 4 4 H 1.07999 * 120.00296 * 203.09240 * 3 2 1 5 5 C 1.38831 * 120.00029 * 23.08661 * 3 2 1 6 6 N 1.31562 * 119.99497 * 12.89849 * 5 3 2 7 7 Si 1.86790 * 119.99926 * 192.90015 * 5 3 2 8 8 H 1.48495 * 109.47335 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47232 * 120.00203 * 7 5 3 10 10 H 1.48500 * 109.47067 * 239.99806 * 7 5 3 11 11 C 1.38935 * 119.99882 * 180.02562 * 2 1 3 12 12 C 1.39325 * 120.94342 * 90.01952 * 11 2 1 13 13 C 1.38320 * 119.54876 * 179.97438 * 12 11 2 14 14 N 1.31676 * 121.38614 * 359.57852 * 13 12 11 15 15 C 1.33182 * 121.60903 * 0.67188 * 14 13 12 16 16 C 1.46417 * 133.70504 * 179.19587 * 15 14 13 17 17 C 1.34397 * 107.07438 * 180.02562 * 16 15 14 18 18 N 1.36578 * 109.88171 * 359.97438 * 17 16 15 19 19 H 0.97006 * 125.10020 * 179.97438 * 18 17 16 20 20 C 1.37603 * 109.79896 * 0.26853 * 18 17 16 21 21 H 1.09001 * 109.46620 * 275.11900 * 1 2 3 22 22 H 1.08998 * 109.47214 * 35.11863 * 1 2 3 23 23 H 1.08997 * 109.47128 * 155.11938 * 1 2 3 24 24 H 0.97006 * 119.99782 * 179.97438 * 6 5 3 25 25 H 1.08006 * 120.22293 * 359.95487 * 12 11 2 26 26 H 1.08008 * 119.30801 * 179.97438 * 13 12 11 27 27 H 1.08002 * 126.46146 * 0.05472 * 16 15 14 28 28 H 1.07999 * 125.05619 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1643 1.2224 -0.3668 5 6 1.5385 2.3391 0.4715 6 7 0.4122 2.2585 1.1465 7 14 2.3159 4.0063 0.1472 8 1 3.5699 3.8255 -0.6274 9 1 1.3718 4.8504 -0.6282 10 1 2.6245 4.6684 1.4401 11 6 2.1597 -1.2032 -0.0005 12 6 2.5183 -1.8229 -1.1958 13 6 3.2101 -3.0202 -1.1626 14 7 3.5465 -3.5866 -0.0225 15 6 3.2255 -3.0410 1.1493 16 6 3.4433 -3.4355 2.5424 17 6 2.8906 -2.4833 3.3132 18 7 2.3379 -1.5125 2.5275 19 1 1.8809 -0.7223 2.8557 20 6 2.5208 -1.8268 1.2003 21 1 -0.3632 0.0917 1.0236 22 1 -0.3633 0.8406 -0.5912 23 1 -0.3633 -0.9323 -0.4324 24 1 -0.0144 3.0649 1.4763 25 1 2.2575 -1.3716 -2.1417 26 1 3.4857 -3.4974 -2.0915 27 1 3.9526 -4.3238 2.8858 28 1 2.8844 -2.4856 4.3932 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989776.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:54 Heat of formation + Delta-G solvation = 74.041165 kcal Electronic energy + Delta-G solvation = -14224.496006 eV Core-core repulsion = 11854.987608 eV Total energy + Delta-G solvation = -2369.508397 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.23379 -38.80305 -37.54725 -33.95598 -31.79389 -30.37107 -30.04492 -28.08439 -25.69570 -23.50526 -22.90382 -21.20726 -19.29105 -18.62365 -17.62774 -17.16307 -16.31083 -15.78929 -15.57030 -15.18366 -14.84504 -14.37803 -13.89617 -13.59871 -13.31410 -13.17206 -12.94367 -12.89859 -12.63229 -12.22230 -12.07791 -10.85706 -10.71818 -10.28695 -9.21365 -9.12798 -8.78153 -7.99609 -5.54533 0.19744 0.62730 1.41072 1.44072 1.53983 1.85881 2.35277 2.41335 3.12169 3.18582 3.38685 3.51424 4.08578 4.27010 4.33146 4.55408 4.68665 4.78806 4.89270 5.03891 5.10182 5.44502 5.50186 5.54989 5.62904 5.83130 6.11259 6.29673 6.67240 6.97781 7.25119 7.72483 8.10099 9.03379 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.010052 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.051905 B = 2784.721188 C = 3080.154597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.574 5.574 3 C -0.275 4.275 4 H 0.061 0.939 5 C -0.031 4.031 6 N -0.925 5.925 7 Si 0.972 3.028 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.287 1.287 11 C 0.215 3.785 12 C -0.196 4.196 13 C 0.099 3.901 14 N -0.491 5.491 15 C 0.062 3.938 16 C -0.223 4.223 17 C 0.081 3.919 18 N -0.580 5.580 19 H 0.420 0.580 20 C 0.008 3.992 21 H 0.017 0.983 22 H 0.030 0.970 23 H 0.023 0.977 24 H 0.255 0.745 25 H 0.139 0.861 26 H 0.187 0.813 27 H 0.172 0.828 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -7.284 1.937 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.294 5.294 3 C -0.403 4.403 4 H 0.079 0.921 5 C -0.228 4.228 6 N -0.570 5.570 7 Si 0.799 3.201 8 H -0.197 1.197 9 H -0.211 1.211 10 H -0.213 1.213 11 C 0.111 3.889 12 C -0.220 4.220 13 C -0.068 4.068 14 N -0.200 5.200 15 C -0.070 4.070 16 C -0.249 4.249 17 C -0.049 4.049 18 N -0.181 5.181 19 H 0.257 0.743 20 C -0.105 4.105 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.157 0.843 26 H 0.204 0.796 27 H 0.189 0.811 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.181 -7.814 2.130 8.701 hybrid contribution -0.596 2.354 -0.052 2.429 sum 2.585 -5.460 2.077 6.388 Atomic orbital electron populations 1.20646 0.80971 0.96294 0.98552 1.41329 1.02275 0.99631 1.86152 1.19302 0.98493 0.85684 1.36847 0.92118 1.25710 0.98182 1.01546 0.97360 1.70164 1.20077 1.28271 1.38457 0.85155 0.77974 0.79585 0.77383 1.19748 1.21075 1.21345 1.17609 0.93556 0.87690 0.90072 1.22539 1.03127 0.98177 0.98108 1.22870 0.95316 0.92397 0.96195 1.67159 1.21129 1.34326 0.97420 1.20593 0.99813 0.92449 0.94135 1.21744 1.11775 1.03886 0.87502 1.22665 0.95950 0.87612 0.98627 1.41841 1.49673 1.22706 1.03902 0.74296 1.20415 1.04467 0.98573 0.86999 0.96468 0.95139 0.95873 0.93550 0.84339 0.79577 0.81053 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.96 127.77 1.15 9.90 15 2 N -0.57 -28.92 2.97 -534.31 -1.59 -30.50 15 3 C -0.27 -14.91 9.63 84.06 0.81 -14.10 15 4 H 0.06 3.36 7.86 -2.91 -0.02 3.34 15 5 C -0.03 -1.65 5.10 84.88 0.43 -1.22 15 6 N -0.93 -51.01 10.70 21.65 0.23 -50.78 15 7 Si 0.97 43.46 29.57 68.60 2.03 45.49 15 8 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 11 C 0.22 9.83 5.07 38.72 0.20 10.02 15 12 C -0.20 -7.73 10.04 22.55 0.23 -7.51 15 13 C 0.10 3.47 11.15 84.74 0.94 4.42 15 14 N -0.49 -19.07 10.42 -185.39 -1.93 -21.00 15 15 C 0.06 2.47 7.51 41.62 0.31 2.79 15 16 C -0.22 -6.96 11.08 23.52 0.26 -6.70 15 17 C 0.08 2.26 11.82 83.08 0.98 3.24 15 18 N -0.58 -21.41 6.06 -187.18 -1.13 -22.54 15 19 H 0.42 15.99 8.96 -92.70 -0.83 15.15 15 20 C 0.01 0.35 7.24 39.22 0.28 0.63 15 21 H 0.02 0.89 7.34 -2.39 -0.02 0.87 15 22 H 0.03 1.56 7.34 -2.39 -0.02 1.55 15 23 H 0.02 1.00 8.01 -2.39 -0.02 0.99 15 24 H 0.26 13.57 8.31 -92.70 -0.77 12.80 15 25 H 0.14 5.07 8.06 -2.91 -0.02 5.05 15 26 H 0.19 4.82 8.06 -2.91 -0.02 4.79 15 27 H 0.17 4.26 8.06 -2.91 -0.02 4.24 15 28 H 0.22 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -64.14 248.70 3.55 -60.59 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.35 Total: 17.26 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.59 Total: 1.48 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -4.42 Total: -124.83 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.14 3.55 -60.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989776.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.635 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds