Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36111 * 126.27399 * 2 1 4 4 N 1.30110 * 110.08473 * 180.02562 * 3 2 1 5 5 C 1.35674 * 109.49539 * 359.97438 * 4 3 2 6 6 C 1.39830 * 133.87633 * 179.97438 * 5 4 3 7 7 C 1.38177 * 118.16036 * 179.73915 * 6 5 4 8 8 C 1.50693 * 120.22440 * 180.28153 * 7 6 5 9 9 C 1.50700 * 109.47182 * 270.24886 * 8 7 6 10 10 H 1.08003 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00260 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99471 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00105 * 180.02562 * 11 9 8 14 14 H 1.48488 * 109.47237 * 90.00197 * 13 11 9 15 15 H 1.48503 * 109.46591 * 210.00247 * 13 11 9 16 16 H 1.48507 * 109.46911 * 329.99757 * 13 11 9 17 17 C 1.38619 * 119.55123 * 0.53341 * 7 6 5 18 18 N 1.31689 * 121.36078 * 359.46512 * 17 7 6 19 19 C 1.32356 * 121.57245 * 0.26427 * 18 17 7 20 20 H 1.09001 * 109.46920 * 269.97213 * 1 2 3 21 21 H 1.08997 * 109.47135 * 29.96741 * 1 2 3 22 22 H 1.08991 * 109.47146 * 149.97425 * 1 2 3 23 23 H 1.08000 * 124.96499 * 359.97438 * 3 2 1 24 24 H 1.08004 * 120.92529 * 0.03135 * 6 5 4 25 25 H 1.08997 * 109.47384 * 30.25332 * 8 7 6 26 26 H 1.09003 * 109.46908 * 150.25428 * 8 7 6 27 27 H 0.97003 * 119.99373 * 179.97438 * 12 11 9 28 28 H 1.08002 * 119.32264 * 179.75222 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2704 1.0973 0.0000 4 7 3.5199 0.7346 -0.0005 5 6 3.5981 -0.6199 -0.0004 6 6 4.6603 -1.5293 -0.0012 7 6 4.3633 -2.8788 0.0049 8 6 5.4720 -3.8995 0.0107 9 6 5.8470 -4.2418 -1.4081 10 1 5.3341 -3.7674 -2.2317 11 6 6.8457 -5.1600 -1.6549 12 7 7.4705 -5.7373 -0.6519 13 14 7.3110 -5.5838 -3.4137 14 1 8.3822 -4.6659 -3.8772 15 1 7.7999 -6.9848 -3.4723 16 1 6.1206 -5.4379 -4.2895 17 6 3.0387 -3.2874 0.0003 18 7 2.0524 -2.4149 0.0008 19 6 2.2805 -1.1111 0.0004 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5133 22 1 -0.3633 -0.8897 -0.5142 23 1 1.9230 2.1199 -0.0004 24 1 5.6845 -1.1866 -0.0017 25 1 6.3401 -3.4901 0.5273 26 1 5.1344 -4.7996 0.5245 27 1 8.1729 -6.3835 -0.8256 28 1 2.8109 -4.3431 0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011348.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = 79.615008 kcal Electronic energy + Delta-G solvation = -13635.044534 eV Core-core repulsion = 11265.777837 eV Total energy + Delta-G solvation = -2369.266697 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89247 -38.02568 -34.22407 -33.53311 -31.62766 -29.60350 -27.65539 -26.45449 -23.73734 -23.20553 -20.86096 -20.35991 -17.38527 -16.85009 -16.35156 -15.78396 -15.38894 -14.56849 -13.99553 -13.49205 -13.40427 -12.75235 -12.43979 -12.41693 -12.03208 -11.72265 -11.29503 -10.86933 -10.61678 -10.45036 -10.30126 -9.80062 -9.43624 -8.66234 -8.42386 -8.10075 -7.78443 -6.06305 -4.10545 1.29440 1.95613 2.61874 3.12024 3.30914 3.37203 3.41377 4.35496 4.46731 4.51265 4.58644 4.69975 5.11088 5.26170 5.28892 5.41369 5.49518 5.74896 5.91395 6.23368 6.43530 6.75307 6.83657 7.24421 7.26788 7.50274 7.65400 7.88973 8.05689 8.27016 8.40144 8.94163 9.53804 11.03322 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051500 B = 0.006622 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.563995 B = 4227.494944 C = 4287.131913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.492 5.492 3 C 0.253 3.747 4 N -0.491 5.491 5 C 0.001 3.999 6 C -0.034 4.034 7 C -0.094 4.094 8 C 0.057 3.943 9 C -0.515 4.515 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.142 3.858 18 N -0.494 5.494 19 C 0.215 3.785 20 H 0.069 0.931 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.214 0.786 24 H 0.137 0.863 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 10.128 1.735 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.188 5.188 3 C -0.033 4.033 4 N -0.210 5.210 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.099 4.099 8 C 0.019 3.981 9 C -0.553 4.553 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.024 4.024 18 N -0.207 5.207 19 C -0.017 4.017 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.230 0.770 24 H 0.155 0.845 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.266 10.288 1.777 16.108 hybrid contribution 0.338 -0.400 -0.996 1.125 sum -11.928 9.889 0.781 15.514 Atomic orbital electron populations 1.21872 0.76291 1.04291 1.03061 1.44851 1.07070 1.04794 1.62067 1.25201 0.85291 0.92748 1.00092 1.70365 1.18090 1.11318 1.21254 1.19691 0.93562 0.90820 1.07713 1.20671 0.97741 0.90755 0.96968 1.21435 0.97347 0.95110 0.95977 1.18259 0.90321 0.91511 0.97964 1.21054 1.19017 1.23869 0.91374 0.92487 1.24993 0.96026 0.95883 0.97257 1.69954 1.24283 1.28272 1.30596 0.86528 0.78831 0.77606 0.84710 1.20573 1.21128 1.19818 1.22601 0.87451 0.97946 0.94379 1.66373 1.38056 0.99241 1.17041 1.18914 0.88908 0.88169 1.05758 0.91220 0.89867 0.89608 0.76981 0.84534 0.94865 0.94702 0.92765 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.19 59.85 0.67 1.47 15 2 N -0.49 -7.05 3.20 -125.02 -0.40 -7.45 15 3 C 0.25 3.38 12.50 -89.71 -1.12 2.26 15 4 N -0.49 -8.81 11.28 -12.00 -0.14 -8.95 15 5 C 0.00 0.02 7.24 -84.67 -0.61 -0.59 15 6 C -0.03 -0.71 9.89 -39.01 -0.39 -1.10 15 7 C -0.09 -2.06 5.08 -104.51 -0.53 -2.59 15 8 C 0.06 1.42 5.12 -29.04 -0.15 1.27 15 9 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 15 10 H 0.06 1.57 7.74 -52.48 -0.41 1.17 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -25.85 13.29 55.43 0.74 -25.11 15 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 17 C 0.14 2.85 10.83 -17.47 -0.19 2.66 15 18 N -0.49 -9.68 10.38 -12.27 -0.13 -9.81 15 19 C 0.22 4.07 8.01 -155.63 -1.25 2.83 15 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.08 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.21 1.60 8.06 -52.49 -0.42 1.17 15 24 H 0.14 2.80 8.06 -52.48 -0.42 2.38 15 25 H 0.03 0.87 8.09 -51.93 -0.42 0.45 15 26 H 0.03 0.89 8.09 -51.93 -0.42 0.47 15 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 28 H 0.16 2.96 8.06 -52.49 -0.42 2.54 15 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -32.73 254.25 -8.01 -40.74 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -2.92 Total: -2.94 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.98 Total: -6.66 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.07 Total: -51.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.73 -8.01 -40.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011348.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.352 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds