Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36111 * 126.27399 * 2 1 4 4 N 1.30110 * 110.08473 * 180.02562 * 3 2 1 5 5 C 1.35674 * 109.49539 * 359.97438 * 4 3 2 6 6 C 1.39830 * 133.87633 * 179.97438 * 5 4 3 7 7 C 1.38177 * 118.16036 * 179.73915 * 6 5 4 8 8 C 1.50693 * 120.22440 * 180.28153 * 7 6 5 9 9 C 1.50700 * 109.47182 * 270.24886 * 8 7 6 10 10 H 1.08003 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00260 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99471 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00105 * 180.02562 * 11 9 8 14 14 H 1.48488 * 109.47237 * 90.00197 * 13 11 9 15 15 H 1.48503 * 109.46591 * 210.00247 * 13 11 9 16 16 H 1.48507 * 109.46911 * 329.99757 * 13 11 9 17 17 C 1.38619 * 119.55123 * 0.53341 * 7 6 5 18 18 N 1.31689 * 121.36078 * 359.46512 * 17 7 6 19 19 C 1.32356 * 121.57245 * 0.26427 * 18 17 7 20 20 H 1.09001 * 109.46920 * 269.97213 * 1 2 3 21 21 H 1.08997 * 109.47135 * 29.96741 * 1 2 3 22 22 H 1.08991 * 109.47146 * 149.97425 * 1 2 3 23 23 H 1.08000 * 124.96499 * 359.97438 * 3 2 1 24 24 H 1.08004 * 120.92529 * 0.03135 * 6 5 4 25 25 H 1.08997 * 109.47384 * 30.25332 * 8 7 6 26 26 H 1.09003 * 109.46908 * 150.25428 * 8 7 6 27 27 H 0.97003 * 119.99373 * 179.97438 * 12 11 9 28 28 H 1.08002 * 119.32264 * 179.75222 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2704 1.0973 0.0000 4 7 3.5199 0.7346 -0.0005 5 6 3.5981 -0.6199 -0.0004 6 6 4.6603 -1.5293 -0.0012 7 6 4.3633 -2.8788 0.0049 8 6 5.4720 -3.8995 0.0107 9 6 5.8470 -4.2418 -1.4081 10 1 5.3341 -3.7674 -2.2317 11 6 6.8457 -5.1600 -1.6549 12 7 7.4705 -5.7373 -0.6519 13 14 7.3110 -5.5838 -3.4137 14 1 8.3822 -4.6659 -3.8772 15 1 7.7999 -6.9848 -3.4723 16 1 6.1206 -5.4379 -4.2895 17 6 3.0387 -3.2874 0.0003 18 7 2.0524 -2.4149 0.0008 19 6 2.2805 -1.1111 0.0004 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5133 22 1 -0.3633 -0.8897 -0.5142 23 1 1.9230 2.1199 -0.0004 24 1 5.6845 -1.1866 -0.0017 25 1 6.3401 -3.4901 0.5273 26 1 5.1344 -4.7996 0.5245 27 1 8.1729 -6.3835 -0.8256 28 1 2.8109 -4.3431 0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011348.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = 59.833928 kcal Electronic energy + Delta-G solvation = -13635.902306 eV Core-core repulsion = 11265.777837 eV Total energy + Delta-G solvation = -2370.124469 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.21187 -39.50828 -35.69378 -35.22442 -33.39813 -31.12247 -29.18824 -27.72927 -25.40815 -24.81848 -22.46845 -21.65594 -18.72108 -18.50189 -18.14974 -16.98942 -16.92964 -16.39171 -15.31434 -14.80827 -14.65924 -14.23498 -14.07281 -13.75921 -13.43169 -13.31985 -13.19232 -12.69747 -12.50794 -12.01484 -11.81562 -11.62145 -11.25994 -10.59847 -10.15228 -9.50194 -9.33418 -8.18746 -6.31359 -0.12424 0.37993 1.42148 1.42596 1.49099 1.53973 1.86356 2.41411 2.89486 3.12349 3.18208 3.45366 3.76031 4.07255 4.16216 4.24405 4.44047 4.47741 4.69204 4.75139 4.98509 5.15076 5.25540 5.36930 5.71171 5.73884 5.75765 6.12055 6.17338 6.78128 6.79694 6.89708 7.36945 8.90398 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051500 B = 0.006622 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.563995 B = 4227.494944 C = 4287.131913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.488 5.488 3 C 0.289 3.711 4 N -0.535 5.535 5 C -0.013 4.013 6 C -0.049 4.049 7 C -0.110 4.110 8 C 0.068 3.932 9 C -0.530 4.530 10 H 0.051 0.949 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.963 3.037 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.268 1.268 17 C 0.132 3.868 18 N -0.490 5.490 19 C 0.200 3.800 20 H 0.086 0.914 21 H 0.129 0.871 22 H 0.075 0.925 23 H 0.278 0.722 24 H 0.128 0.872 25 H 0.009 0.991 26 H 0.022 0.978 27 H 0.266 0.734 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 12.080 0.855 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.182 5.182 3 C 0.004 3.996 4 N -0.256 5.256 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.114 4.114 8 C 0.030 3.970 9 C -0.568 4.568 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.192 1.192 17 C -0.034 4.034 18 N -0.203 5.203 19 C -0.035 4.035 20 H 0.105 0.895 21 H 0.147 0.853 22 H 0.094 0.906 23 H 0.293 0.707 24 H 0.146 0.854 25 H 0.027 0.973 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.446 12.249 0.901 18.961 hybrid contribution 0.868 -0.804 -0.672 1.361 sum -13.578 11.444 0.229 17.759 Atomic orbital electron populations 1.22292 0.72879 1.06124 1.04789 1.45293 1.08998 1.03243 1.60656 1.26519 0.83755 0.94611 0.94763 1.70374 1.20961 1.09882 1.24356 1.19801 0.93717 0.92100 1.07628 1.20638 0.98113 0.91064 0.97864 1.21088 0.97186 0.94699 0.98474 1.17977 0.90618 0.91792 0.96569 1.21333 1.19211 1.23949 0.92313 0.93077 1.25837 0.95889 0.95702 1.01485 1.70063 1.24847 1.28872 1.32743 0.85483 0.78592 0.77601 0.79597 1.20030 1.20275 1.19221 1.22652 0.86854 0.98781 0.95072 1.66431 1.37360 0.99736 1.16760 1.19291 0.89823 0.88804 1.05566 0.89523 0.85263 0.90637 0.70653 0.85397 0.97252 0.96007 0.92480 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.19 127.77 1.43 2.52 15 2 N -0.49 -12.18 3.20 -549.47 -1.76 -13.94 15 3 C 0.29 6.45 12.50 180.03 2.25 8.70 15 4 N -0.54 -18.20 11.28 -191.89 -2.16 -20.37 15 5 C -0.01 -0.54 7.24 39.52 0.29 -0.25 15 6 C -0.05 -2.16 9.89 22.64 0.22 -1.93 15 7 C -0.11 -5.02 5.08 -19.79 -0.10 -5.12 15 8 C 0.07 3.59 5.12 29.10 0.15 3.74 15 9 C -0.53 -30.07 9.09 25.60 0.23 -29.84 15 10 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 11 C 0.01 0.54 5.46 84.65 0.46 1.01 15 12 N -0.93 -54.94 13.29 21.45 0.28 -54.65 15 13 Si 0.96 44.27 29.54 68.60 2.03 46.30 15 14 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 17 C 0.13 5.44 10.83 84.81 0.92 6.36 15 18 N -0.49 -19.00 10.38 -192.73 -2.00 -21.00 15 19 C 0.20 7.30 8.01 133.84 1.07 8.37 15 20 H 0.09 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.13 0.65 8.14 -2.39 -0.02 0.63 15 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.28 2.18 8.06 -2.91 -0.02 2.15 15 24 H 0.13 5.63 8.06 -2.91 -0.02 5.60 15 25 H 0.01 0.52 8.09 -2.39 -0.02 0.50 15 26 H 0.02 1.17 8.09 -2.39 -0.02 1.15 15 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 28 H 0.18 6.53 8.06 -2.91 -0.02 6.51 15 Total: -1.00 -73.44 254.25 4.47 -68.97 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.16 Total: 1.14 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 6.92 Total: -6.45 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -5.64 Total: -109.96 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.44 4.47 -68.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011348.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.803 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds