Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00177 * 2 1 4 4 H 1.48498 * 109.47161 * 270.00417 * 3 2 1 5 5 H 1.48507 * 109.47063 * 30.00113 * 3 2 1 6 6 H 1.48502 * 109.47442 * 150.00317 * 3 2 1 7 7 C 1.39945 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00170 * 162.28113 * 7 2 1 9 9 C 1.41389 * 120.00304 * 342.55168 * 7 2 1 10 10 C 1.40718 * 120.24894 * 155.03075 * 9 7 2 11 11 C 1.37613 * 119.74734 * 179.74362 * 10 9 7 12 12 C 1.38635 * 120.24823 * 0.53083 * 11 10 9 13 13 C 1.50701 * 119.75202 * 179.74282 * 12 11 10 14 14 C 1.53000 * 109.46916 * 269.97695 * 13 12 11 15 15 N 1.46904 * 115.55313 * 34.41599 * 14 13 12 16 16 C 1.52996 * 117.50324 * 248.74552 * 14 13 12 17 17 C 1.53006 * 117.49993 * 180.08442 * 14 13 12 18 18 C 1.38636 * 120.50191 * 359.71874 * 12 11 10 19 19 C 1.37617 * 120.24871 * 0.02562 * 18 12 11 20 20 H 0.96997 * 119.99958 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.12570 * 359.97125 * 10 9 7 22 22 H 1.08003 * 119.87946 * 180.27309 * 11 10 9 23 23 H 1.09002 * 109.46894 * 29.97427 * 13 12 11 24 24 H 1.08997 * 109.47583 * 149.98132 * 13 12 11 25 25 H 1.00903 * 110.99826 * 325.58206 * 15 14 13 26 26 H 1.00905 * 110.99935 * 89.53439 * 15 14 13 27 27 H 1.09006 * 117.49351 * 359.97438 * 16 14 13 28 28 H 1.08995 * 117.50554 * 145.01971 * 16 14 13 29 29 H 1.08997 * 117.50024 * 214.98214 * 17 14 13 30 30 H 1.08993 * 117.49385 * 359.97438 * 17 14 13 31 31 H 1.08005 * 119.87722 * 180.02562 * 18 12 11 32 32 H 1.07994 * 120.12835 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8189 -3.6486 -0.1052 11 6 1.1737 -4.8072 0.2624 12 6 0.0588 -4.7548 1.0848 13 6 -0.6427 -6.0301 1.4756 14 6 -1.7307 -6.3491 0.4484 15 7 -1.4220 -5.9753 -0.9384 16 6 -3.1871 -6.2349 0.9031 17 6 -2.5633 -7.6134 0.6705 18 6 -0.4154 -3.5383 1.5508 19 6 0.2172 -2.3675 1.2003 20 1 -0.4850 0.8400 0.0004 21 1 2.6844 -3.6913 -0.7499 22 1 1.5346 -5.7605 -0.0945 23 1 0.0786 -6.8467 1.5064 24 1 -1.0962 -5.9085 2.4593 25 1 -0.8724 -5.1297 -0.9712 26 1 -0.9554 -6.7288 -1.4207 27 1 -3.3700 -5.9330 1.9344 28 1 -3.9162 -5.8829 0.1734 29 1 -2.8823 -8.1675 -0.2122 30 1 -2.3356 -8.2180 1.5483 31 1 -1.2845 -3.5093 2.1913 32 1 -0.1541 -1.4208 1.5640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = 27.604147 kcal Electronic energy + Delta-G solvation = -14046.515037 eV Core-core repulsion = 11778.533323 eV Total energy + Delta-G solvation = -2267.981714 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.48682 -36.89721 -33.82398 -31.11783 -30.24588 -29.23869 -27.40655 -24.04580 -22.14542 -20.97897 -20.31291 -18.83979 -17.32001 -15.54988 -15.32707 -15.06888 -14.11706 -13.89166 -13.58399 -13.52807 -12.54856 -12.43700 -12.00768 -11.88624 -11.59247 -11.16191 -11.05619 -10.93039 -10.77672 -10.40346 -10.11937 -9.80166 -9.41400 -9.31996 -9.11860 -8.19274 -7.48305 -7.31862 -6.77824 -4.36988 2.72981 3.01519 3.06066 3.09115 3.17485 3.91592 4.13558 4.56357 4.81139 5.20172 5.30174 5.59283 5.68461 5.86978 6.02516 6.14911 6.19700 6.25061 6.36375 6.40417 6.43911 6.48107 6.92997 7.05378 7.25378 7.33219 7.57639 7.70843 7.83757 7.97755 8.02892 8.09263 8.27126 8.61496 8.87104 8.94628 10.16436 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.055467 B = 0.006819 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.688036 B = 4105.449477 C = 4284.351310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.110 3.890 10 C -0.225 4.225 11 C -0.092 4.092 12 C -0.214 4.214 13 C -0.044 4.044 14 C 0.059 3.941 15 N -0.816 5.816 16 C -0.164 4.164 17 C -0.185 4.185 18 C -0.089 4.089 19 C -0.163 4.163 20 H 0.281 0.719 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.363 0.637 26 H 0.331 0.669 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -6.543 1.532 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.108 3.892 10 C -0.245 4.245 11 C -0.111 4.111 12 C -0.216 4.216 13 C -0.083 4.083 14 C -0.035 4.035 15 N -0.348 5.348 16 C -0.202 4.202 17 C -0.222 4.222 18 C -0.108 4.108 19 C -0.182 4.182 20 H 0.092 0.908 21 H 0.109 0.891 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.181 0.819 26 H 0.143 0.857 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.973 -6.284 1.402 7.092 hybrid contribution 1.261 0.675 0.181 1.442 sum -1.712 -5.609 1.584 6.075 Atomic orbital electron populations 1.69823 1.07572 1.29259 1.34933 1.25912 0.94720 1.01326 0.92255 0.86336 0.80653 0.80650 0.79232 1.19486 1.20084 1.18484 1.19584 0.98029 0.91272 1.40348 0.90510 1.17622 0.91140 0.92009 0.88424 1.20953 1.03809 0.92923 1.06806 1.20361 0.95865 0.96258 0.98592 1.18893 1.00739 0.93152 1.08782 1.20297 0.95438 0.95895 0.96686 1.21358 0.92140 0.99613 0.90370 1.58695 1.54905 1.09451 1.11713 1.23094 0.96778 0.98918 1.01413 1.23100 1.05536 0.90980 1.02616 1.20523 0.98099 0.92651 0.99524 1.21324 0.99202 0.96743 1.00938 0.90835 0.89100 0.89875 0.92748 0.92303 0.81900 0.85680 0.89368 0.88853 0.89114 0.89329 0.89622 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.95 55.55 0.61 -19.79 16 2 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.53 16 9 C 0.11 2.91 5.57 -106.82 -0.60 2.32 16 10 C -0.23 -5.42 9.80 -38.87 -0.38 -5.80 16 11 C -0.09 -1.99 8.45 -39.66 -0.33 -2.33 16 12 C -0.21 -4.52 3.96 -104.33 -0.41 -4.94 16 13 C -0.04 -0.77 5.58 -27.88 -0.16 -0.93 16 14 C 0.06 0.98 2.94 -131.60 -0.39 0.59 16 15 N -0.82 -14.15 9.66 0.75 0.01 -14.14 16 16 C -0.16 -2.50 10.11 -26.70 -0.27 -2.77 16 17 C -0.18 -2.53 10.18 -26.69 -0.27 -2.80 16 18 C -0.09 -2.07 9.67 -39.66 -0.38 -2.45 16 19 C -0.16 -4.19 8.70 -38.87 -0.34 -4.53 16 20 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 21 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 22 H 0.08 1.60 8.06 -52.48 -0.42 1.17 16 23 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 24 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 25 H 0.36 7.20 6.24 -39.29 -0.25 6.96 16 26 H 0.33 5.04 9.08 -39.29 -0.36 4.68 16 27 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 32 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -26.39 270.92 -8.55 -34.94 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -4.26 Total: 15.78 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: -3.96 Total: -34.39 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.62 Total: -33.93 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.39 -8.55 -34.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.540 kcal (2) G-P(sol) polarization free energy of solvation -26.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds