Wall clock time and date at job start Mon Mar 30 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30752 * 120.34274 * 2 1 4 4 C 1.34251 * 121.48757 * 180.02562 * 3 2 1 5 5 C 1.38868 * 131.50912 * 179.97438 * 4 3 2 6 6 C 1.38971 * 107.66503 * 180.02562 * 5 4 3 7 7 N 1.31214 * 108.93925 * 0.02562 * 6 5 4 8 8 N 1.37058 * 121.66025 * 0.02562 * 4 3 2 9 9 C 1.36044 * 120.57306 * 359.73364 * 8 4 3 10 10 C 1.50701 * 120.61295 * 180.28733 * 9 8 4 11 11 C 1.39619 * 118.77561 * 0.51170 * 9 8 4 12 12 C 1.41320 * 120.91183 * 179.77855 * 11 9 8 13 13 H 1.08009 * 119.99590 * 317.45049 * 12 11 9 14 14 C 1.39801 * 120.00386 * 137.45490 * 12 11 9 15 15 N 1.30940 * 119.99647 * 335.34761 * 14 12 11 16 16 Si 1.86799 * 120.00453 * 155.35414 * 14 12 11 17 17 H 1.48494 * 109.46896 * 270.00210 * 16 14 12 18 18 H 1.48502 * 109.46736 * 29.99687 * 16 14 12 19 19 H 1.48497 * 109.47231 * 149.99350 * 16 14 12 20 20 H 1.09005 * 109.47203 * 269.06375 * 1 2 3 21 21 H 1.08998 * 109.47365 * 29.06218 * 1 2 3 22 22 H 1.09000 * 109.47668 * 149.06567 * 1 2 3 23 23 H 1.07997 * 126.17058 * 0.06303 * 5 4 3 24 24 H 1.07994 * 125.53248 * 179.97438 * 6 5 4 25 25 H 1.09002 * 109.46651 * 270.22864 * 10 9 8 26 26 H 1.09002 * 109.47073 * 30.22928 * 10 9 8 27 27 H 1.08997 * 109.47011 * 150.23434 * 10 9 8 28 28 H 0.96998 * 119.99857 * 354.85166 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1674 1.1284 0.0000 4 6 3.5097 1.1552 -0.0005 5 6 4.4091 2.2133 -0.0011 6 6 5.6911 1.6770 -0.0020 7 7 5.6051 0.3677 -0.0026 8 7 4.2522 0.0032 -0.0016 9 6 3.6426 -1.2130 0.0033 10 6 4.4583 -2.4802 0.0086 11 6 2.2475 -1.2655 -0.0015 12 6 1.5676 -2.5044 -0.0015 13 1 1.9142 -3.3106 -0.6312 14 6 0.4464 -2.6865 0.8135 15 7 0.2959 -1.9592 1.8919 16 14 -0.8368 -3.9676 0.3644 17 1 -1.8737 -3.3478 -0.4991 18 1 -0.1863 -5.0843 -0.3671 19 1 -1.4701 -4.4890 1.6022 20 1 -0.3634 -0.0168 1.0276 21 1 -0.3634 0.8982 -0.4992 22 1 -0.3634 -0.8815 -0.5283 23 1 4.1576 3.2636 -0.0003 24 1 6.6093 2.2456 -0.0031 25 1 4.6585 -2.7876 -1.0178 26 1 5.4015 -2.3030 0.5255 27 1 3.9047 -3.2664 0.5219 28 1 0.9968 -1.3473 2.1659 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:35 Heat of formation + Delta-G solvation = 88.173781 kcal Electronic energy + Delta-G solvation = -14389.713258 eV Core-core repulsion = 12020.817698 eV Total energy + Delta-G solvation = -2368.895561 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90972 -37.32354 -34.31932 -33.61101 -30.35971 -29.24773 -27.51439 -26.94183 -24.72616 -21.81408 -20.92994 -19.74373 -18.27789 -17.03272 -15.50588 -14.97682 -14.32766 -13.91878 -13.69536 -13.05614 -12.80884 -12.60293 -12.26284 -12.18264 -12.02319 -11.74895 -11.19907 -10.91738 -10.73674 -10.58478 -10.46310 -9.94445 -9.62743 -9.14381 -8.67801 -8.02042 -7.52806 -6.89263 -4.75826 1.74437 2.15768 3.03454 3.04690 3.21922 3.36303 3.56723 3.84110 4.27274 4.73227 4.88352 5.25336 5.40446 6.00052 6.11193 6.27250 6.27385 6.34296 6.43072 6.47059 6.50667 6.74634 6.80891 6.85608 7.22036 7.46302 7.49265 7.62045 7.65749 8.18849 8.42108 8.61176 8.84697 9.78683 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.010468 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.701039 B = 2674.051170 C = 3123.629763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.177 3.823 3 N -0.483 5.483 4 C 0.222 3.778 5 C -0.305 4.305 6 C 0.046 3.954 7 N -0.357 5.357 8 N -0.248 5.248 9 C -0.018 4.018 10 C -0.068 4.068 11 C 0.017 3.983 12 C -0.504 4.504 13 H 0.088 0.912 14 C 0.039 3.961 15 N -0.789 5.789 16 Si 1.069 2.931 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.091 0.909 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.139 0.861 24 H 0.176 0.824 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -0.759 -2.093 2.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 N -0.195 5.195 4 C -0.010 4.010 5 C -0.338 4.338 6 C -0.126 4.126 7 N -0.186 5.186 8 N -0.016 5.016 9 C -0.134 4.134 10 C -0.125 4.125 11 C 0.009 3.991 12 C -0.534 4.534 13 H 0.106 0.894 14 C -0.182 4.182 15 N -0.412 5.412 16 Si 0.891 3.109 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.200 1.200 20 H 0.109 0.891 21 H 0.078 0.922 22 H 0.102 0.898 23 H 0.157 0.843 24 H 0.192 0.808 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.500 -1.491 -1.583 2.642 hybrid contribution 1.639 0.886 -0.482 1.925 sum 0.140 -0.605 -2.066 2.157 Atomic orbital electron populations 1.20850 0.88140 1.02228 1.03784 1.23643 0.96727 0.87722 0.90876 1.67572 1.04315 1.29815 1.17835 1.20305 0.87839 0.87159 1.05654 1.20544 0.90178 0.97315 1.25724 1.23274 0.97759 0.91731 0.99868 1.77530 0.92048 1.14417 1.34559 1.46531 1.06081 1.05986 1.42994 1.20936 0.91585 0.83784 1.17060 1.20229 0.98015 0.93223 1.01052 1.18995 0.88497 0.94375 0.97232 1.20087 1.11370 0.97924 1.24021 0.89413 1.26979 0.98905 1.00128 0.92196 1.70515 1.36089 1.16838 1.17761 0.83560 0.75099 0.75051 0.77142 1.19621 1.19960 1.19981 0.89109 0.92233 0.89826 0.84303 0.80752 0.92937 0.92569 0.90087 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 8.46 36.00 0.30 -1.61 15 2 C 0.18 4.23 6.29 -79.67 -0.50 3.73 15 3 N -0.48 -11.99 10.36 -6.85 -0.07 -12.06 15 4 C 0.22 5.57 7.88 -155.37 -1.22 4.35 15 5 C -0.31 -6.71 10.92 -39.08 -0.43 -7.13 15 6 C 0.05 0.95 11.95 -17.54 -0.21 0.74 15 7 N -0.36 -8.39 12.44 30.50 0.38 -8.01 15 8 N -0.25 -6.25 3.85 -7.62 -0.03 -6.28 15 9 C -0.02 -0.44 6.98 -80.21 -0.56 -1.00 15 10 C -0.07 -1.43 9.62 36.01 0.35 -1.08 15 11 C 0.02 0.41 4.95 -104.83 -0.52 -0.11 15 12 C -0.50 -11.62 7.19 -37.83 -0.27 -11.89 15 13 H 0.09 1.97 7.75 -52.48 -0.41 1.56 15 14 C 0.04 0.85 3.35 -17.35 -0.06 0.79 15 15 N -0.79 -18.47 11.21 55.54 0.62 -17.84 15 16 Si 1.07 18.85 29.94 -169.99 -5.09 13.76 15 17 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 18 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 19 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 20 H 0.09 1.90 6.61 -51.93 -0.34 1.56 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.08 1.68 6.43 -51.93 -0.33 1.34 15 23 H 0.14 2.69 8.06 -52.49 -0.42 2.27 15 24 H 0.18 2.71 8.06 -52.49 -0.42 2.28 15 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.06 1.15 8.09 -51.93 -0.42 0.73 15 27 H 0.08 1.64 7.14 -51.93 -0.37 1.27 15 28 H 0.29 7.29 7.21 -40.82 -0.29 6.99 15 LS Contribution 242.31 15.07 3.65 3.65 Total: -1.00 -27.29 242.31 -6.31 -33.60 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.65 Total: 6.40 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.12 Total: -13.22 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.90 Total: -44.19 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.09 Total: 13.76 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.29 -6.31 -33.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.774 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds