Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47489 * 2 1 4 4 C 1.50699 * 109.46847 * 239.99999 * 2 1 3 5 5 H 1.08001 * 120.00242 * 275.02255 * 4 2 1 6 6 C 1.37876 * 120.00249 * 95.01910 * 4 2 1 7 7 N 1.31515 * 120.00608 * 184.91790 * 6 4 2 8 8 Si 1.86802 * 119.99843 * 4.91933 * 6 4 2 9 9 H 1.48500 * 109.47370 * 84.83102 * 8 6 4 10 10 H 1.48497 * 109.47384 * 204.83399 * 8 6 4 11 11 H 1.48507 * 109.47164 * 324.83322 * 8 6 4 12 12 C 1.50701 * 109.47365 * 120.00625 * 2 1 3 13 13 C 1.40245 * 120.27244 * 59.99194 * 12 2 1 14 14 N 1.31220 * 120.27634 * 180.02562 * 13 12 2 15 15 C 1.33979 * 120.81577 * 359.97438 * 14 13 12 16 16 C 1.38857 * 132.57920 * 179.97438 * 15 14 13 17 17 C 1.38660 * 107.64922 * 180.02562 * 16 15 14 18 18 N 1.31411 * 108.99465 * 0.02562 * 17 16 15 19 19 N 1.37168 * 120.53939 * 359.97438 * 15 14 13 20 20 C 1.35528 * 120.26812 * 239.72308 * 12 2 1 21 21 H 1.08999 * 109.47589 * 54.98056 * 1 2 3 22 22 H 1.08998 * 109.47625 * 174.98608 * 1 2 3 23 23 H 1.09000 * 109.46972 * 294.98171 * 1 2 3 24 24 H 0.97003 * 120.00262 * 180.02562 * 7 6 4 25 25 H 1.07998 * 119.86275 * 359.97438 * 13 12 2 26 26 H 1.07996 * 126.17536 * 0.02562 * 16 15 14 27 27 H 1.08001 * 125.50320 * 180.02562 * 17 16 15 28 28 H 1.07994 * 120.44044 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1350 -1.7855 -1.2292 6 6 2.3605 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3144 1.8791 -2.3171 9 1 3.6001 2.3944 -1.7817 10 1 2.1069 2.3993 -3.6924 11 1 1.1995 2.3278 -1.4447 12 6 2.0324 -0.7105 1.2304 13 6 1.6970 -2.0531 1.4579 14 7 2.1340 -2.6718 2.5295 15 6 2.9053 -2.0366 3.4221 16 6 3.4912 -2.4415 4.6141 17 6 4.1889 -1.3593 5.1285 18 7 4.0524 -0.3365 4.3147 19 7 3.2546 -0.7238 3.2323 20 6 2.8165 -0.0589 2.1233 21 1 -0.3634 0.5897 -0.8416 22 1 -0.3634 -1.0237 -0.0898 23 1 -0.3633 0.4340 0.9315 24 1 2.9374 -0.1047 -4.2553 25 1 1.0757 -2.5799 0.7487 26 1 3.4168 -3.4223 5.0601 27 1 4.7534 -1.3572 6.0492 28 1 3.0884 0.9737 1.9614 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = 108.027834 kcal Electronic energy + Delta-G solvation = -13942.649120 eV Core-core repulsion = 11574.614495 eV Total energy + Delta-G solvation = -2368.034625 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.86726 -38.02815 -34.80903 -33.32008 -31.88219 -29.44092 -28.35131 -25.40407 -24.31472 -23.23104 -21.19054 -20.07399 -18.13095 -16.93258 -16.39666 -15.61795 -15.48279 -14.52999 -13.88943 -13.63777 -13.03361 -12.69892 -12.66701 -12.38101 -12.24973 -11.52194 -11.23039 -11.01292 -10.84229 -10.65774 -10.27198 -9.98265 -9.57557 -9.22441 -8.79585 -8.74784 -7.48184 -6.28296 -4.30806 0.98830 1.39750 2.47770 2.93739 3.14704 3.22475 3.25111 3.88346 4.22613 4.29136 4.52018 4.95216 5.03353 5.30882 5.49544 5.69456 5.77852 5.93438 6.10820 6.23131 6.41100 6.46104 6.56844 6.71256 6.82751 6.93140 7.13389 7.45325 7.77546 8.03463 8.24806 8.73317 9.31016 10.83852 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.043896 B = 0.008393 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.716771 B = 3335.479477 C = 3517.956835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.057 3.943 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.262 1.262 12 C -0.121 4.121 13 C 0.206 3.794 14 N -0.479 5.479 15 C 0.256 3.744 16 C -0.287 4.287 17 C 0.077 3.923 18 N -0.331 5.331 19 N -0.301 5.301 20 C 0.120 3.880 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.026 0.974 24 H 0.268 0.732 25 H 0.181 0.819 26 H 0.154 0.846 27 H 0.190 0.810 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 0.794 10.734 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.036 3.964 3 H 0.063 0.937 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.699 3.301 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.186 1.186 12 C -0.127 4.127 13 C 0.023 3.977 14 N -0.190 5.190 15 C 0.026 3.974 16 C -0.318 4.318 17 C -0.100 4.100 18 N -0.157 5.157 19 N -0.071 5.071 20 C -0.013 4.013 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.198 0.802 26 H 0.172 0.828 27 H 0.207 0.793 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.061 1.176 10.777 10.893 hybrid contribution 0.176 0.970 -0.249 1.016 sum -0.884 2.145 10.529 10.781 Atomic orbital electron populations 1.22036 0.97146 1.01250 0.99114 1.18195 0.93137 0.95557 0.89484 0.93664 1.20840 1.45035 0.95556 0.94081 0.90229 1.25016 0.94024 0.98396 0.95169 1.69873 1.44772 1.36136 1.01722 0.86932 0.79256 0.86163 0.77742 1.19978 1.21164 1.18622 1.21132 0.98199 0.96059 0.97338 1.23482 0.91818 0.91340 0.91107 1.68296 1.11897 1.35328 1.03505 1.20818 0.97288 0.82431 0.96863 1.20777 1.11602 1.02012 0.97425 1.23631 0.97439 0.90299 0.98635 1.77768 1.17291 1.23253 0.97381 1.47131 1.33253 1.10670 1.16000 1.21910 0.96218 0.99306 0.83881 0.92763 0.92868 0.95523 0.92223 0.80181 0.82831 0.79330 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.92 37.16 0.33 -2.15 15 2 C 0.06 1.15 2.14 -92.93 -0.20 0.95 15 3 H 0.05 0.92 5.02 -51.93 -0.26 0.66 15 4 C -0.52 -12.82 8.65 -34.44 -0.30 -13.12 15 5 H 0.08 2.14 7.69 -52.49 -0.40 1.73 15 6 C 0.08 2.03 5.47 -17.82 -0.10 1.93 15 7 N -0.89 -25.21 13.96 55.43 0.77 -24.44 15 8 Si 0.87 19.49 26.99 -169.99 -4.59 14.90 15 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 15 11 H -0.26 -5.45 6.82 56.52 0.39 -5.06 15 12 C -0.12 -2.29 4.73 -104.84 -0.50 -2.78 15 13 C 0.21 3.76 9.93 -17.06 -0.17 3.59 15 14 N -0.48 -9.07 10.48 -12.21 -0.13 -9.20 15 15 C 0.26 4.83 7.92 -155.51 -1.23 3.60 15 16 C -0.29 -4.60 10.91 -39.20 -0.43 -5.03 15 17 C 0.08 1.13 11.94 -17.58 -0.21 0.92 15 18 N -0.33 -5.91 12.66 30.47 0.39 -5.53 15 19 N -0.30 -5.71 3.90 -12.20 -0.05 -5.75 15 20 C 0.12 2.20 10.92 -16.43 -0.18 2.02 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.91 7.62 -51.93 -0.40 0.51 15 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 15 24 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 25 H 0.18 2.97 7.65 -52.49 -0.40 2.57 15 26 H 0.15 2.08 8.06 -52.49 -0.42 1.65 15 27 H 0.19 1.87 8.06 -52.49 -0.42 1.45 15 28 H 0.17 2.73 7.94 -52.49 -0.42 2.32 15 LS Contribution 247.19 15.07 3.73 3.73 Total: -1.00 -29.33 247.19 -5.58 -34.90 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.72 Total: 1.46 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.98 Total: -10.06 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.98 Total: -44.92 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.59 Total: 14.90 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.33 -5.58 -34.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.929 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds