Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47489 * 2 1 4 4 C 1.50699 * 109.46847 * 239.99999 * 2 1 3 5 5 H 1.08001 * 120.00242 * 275.02255 * 4 2 1 6 6 C 1.37876 * 120.00249 * 95.01910 * 4 2 1 7 7 N 1.31515 * 120.00608 * 184.91790 * 6 4 2 8 8 Si 1.86802 * 119.99843 * 4.91933 * 6 4 2 9 9 H 1.48500 * 109.47370 * 84.83102 * 8 6 4 10 10 H 1.48497 * 109.47384 * 204.83399 * 8 6 4 11 11 H 1.48507 * 109.47164 * 324.83322 * 8 6 4 12 12 C 1.50701 * 109.47365 * 120.00625 * 2 1 3 13 13 C 1.40245 * 120.27244 * 59.99194 * 12 2 1 14 14 N 1.31220 * 120.27634 * 180.02562 * 13 12 2 15 15 C 1.33979 * 120.81577 * 359.97438 * 14 13 12 16 16 C 1.38857 * 132.57920 * 179.97438 * 15 14 13 17 17 C 1.38660 * 107.64922 * 180.02562 * 16 15 14 18 18 N 1.31411 * 108.99465 * 0.02562 * 17 16 15 19 19 N 1.37168 * 120.53939 * 359.97438 * 15 14 13 20 20 C 1.35528 * 120.26812 * 239.72308 * 12 2 1 21 21 H 1.08999 * 109.47589 * 54.98056 * 1 2 3 22 22 H 1.08998 * 109.47625 * 174.98608 * 1 2 3 23 23 H 1.09000 * 109.46972 * 294.98171 * 1 2 3 24 24 H 0.97003 * 120.00262 * 180.02562 * 7 6 4 25 25 H 1.07998 * 119.86275 * 359.97438 * 13 12 2 26 26 H 1.07996 * 126.17536 * 0.02562 * 16 15 14 27 27 H 1.08001 * 125.50320 * 180.02562 * 17 16 15 28 28 H 1.07994 * 120.44044 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1350 -1.7855 -1.2292 6 6 2.3605 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3144 1.8791 -2.3171 9 1 3.6001 2.3944 -1.7817 10 1 2.1069 2.3993 -3.6924 11 1 1.1995 2.3278 -1.4447 12 6 2.0324 -0.7105 1.2304 13 6 1.6970 -2.0531 1.4579 14 7 2.1340 -2.6718 2.5295 15 6 2.9053 -2.0366 3.4221 16 6 3.4912 -2.4415 4.6141 17 6 4.1889 -1.3593 5.1285 18 7 4.0524 -0.3365 4.3147 19 7 3.2546 -0.7238 3.2323 20 6 2.8165 -0.0589 2.1233 21 1 -0.3634 0.5897 -0.8416 22 1 -0.3634 -1.0237 -0.0898 23 1 -0.3633 0.4340 0.9315 24 1 2.9374 -0.1047 -4.2553 25 1 1.0757 -2.5799 0.7487 26 1 3.4168 -3.4223 5.0601 27 1 4.7534 -1.3572 6.0492 28 1 3.0884 0.9737 1.9614 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = 90.124117 kcal Electronic energy + Delta-G solvation = -13943.425483 eV Core-core repulsion = 11574.614495 eV Total energy + Delta-G solvation = -2368.810988 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.20559 -39.41428 -36.38984 -34.78489 -33.67006 -30.83910 -29.72207 -27.19457 -25.70083 -24.66608 -22.51544 -21.61596 -19.66993 -18.57524 -17.87005 -17.06165 -16.88542 -16.20105 -15.21857 -15.07061 -14.52749 -14.39277 -14.02447 -13.91567 -13.69060 -13.07307 -12.81691 -12.55036 -12.38790 -12.03481 -11.78001 -11.76096 -11.25982 -10.75476 -10.67322 -10.22547 -8.81913 -8.27075 -6.32644 -0.39504 0.01025 1.14792 1.39772 1.42109 1.50736 1.71806 2.36729 2.47825 2.94628 3.11027 3.26878 3.58791 3.99953 4.09100 4.41227 4.44352 4.56793 4.76364 4.89535 4.96901 5.01884 5.15233 5.28054 5.44584 5.58641 5.65354 5.70452 6.27638 6.48395 6.64475 6.74322 7.32702 8.88712 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.043896 B = 0.008393 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.716771 B = 3335.479477 C = 3517.956835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.052 0.948 4 C -0.510 4.510 5 H 0.044 0.956 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.931 3.069 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.232 1.232 12 C -0.136 4.136 13 C 0.201 3.799 14 N -0.491 5.491 15 C 0.223 3.777 16 C -0.283 4.283 17 C 0.092 3.908 18 N -0.352 5.352 19 N -0.317 5.317 20 C 0.124 3.876 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.266 0.734 25 H 0.188 0.812 26 H 0.178 0.822 27 H 0.240 0.760 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 1.928 13.185 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.070 0.930 4 C -0.548 4.548 5 H 0.062 0.938 6 C -0.180 4.180 7 N -0.584 5.584 8 Si 0.755 3.245 9 H -0.195 1.195 10 H -0.219 1.219 11 H -0.155 1.155 12 C -0.142 4.142 13 C 0.017 3.983 14 N -0.202 5.202 15 C -0.006 4.006 16 C -0.314 4.314 17 C -0.084 4.084 18 N -0.177 5.177 19 N -0.087 5.087 20 C -0.009 4.009 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.205 0.795 26 H 0.196 0.804 27 H 0.256 0.744 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.078 2.306 13.264 13.506 hybrid contribution 0.239 0.488 -0.831 0.993 sum -0.838 2.793 12.433 12.770 Atomic orbital electron populations 1.21934 0.95145 1.01782 1.00317 1.18090 0.94603 0.95285 0.88041 0.93017 1.21097 1.43529 0.94330 0.95862 0.93768 1.25850 0.94135 1.03256 0.94767 1.70033 1.47671 1.38032 1.02714 0.85979 0.80306 0.80391 0.77834 1.19547 1.21919 1.15488 1.20892 0.99572 0.96262 0.97500 1.23594 0.92008 0.91432 0.91239 1.68295 1.12447 1.35642 1.03838 1.21366 0.98250 0.82977 0.97980 1.21290 1.10396 1.03396 0.96301 1.24467 0.96117 0.88651 0.99191 1.77752 1.17559 1.24762 0.97626 1.47285 1.34101 1.10799 1.16556 1.22172 0.95063 1.00096 0.83569 0.93195 0.92570 0.92851 0.92513 0.79533 0.80437 0.74431 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.92 71.98 0.64 -3.94 15 2 C 0.06 2.37 2.14 -12.29 -0.03 2.35 15 3 H 0.05 1.97 5.02 -2.39 -0.01 1.96 15 4 C -0.51 -25.63 8.65 25.60 0.22 -25.41 15 5 H 0.04 2.47 7.69 -2.91 -0.02 2.45 15 6 C 0.02 0.95 5.47 84.65 0.46 1.41 15 7 N -0.95 -55.44 13.96 21.45 0.30 -55.14 15 8 Si 0.93 39.69 26.99 68.60 1.85 41.54 15 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 10 H -0.29 -12.73 7.11 99.48 0.71 -12.03 15 11 H -0.23 -8.69 6.82 99.48 0.68 -8.02 15 12 C -0.14 -5.02 4.73 -20.00 -0.09 -5.11 15 13 C 0.20 7.30 9.93 85.27 0.85 8.15 15 14 N -0.49 -18.30 10.48 -192.55 -2.02 -20.32 15 15 C 0.22 8.07 7.92 133.13 1.05 9.13 15 16 C -0.28 -8.24 10.91 22.52 0.25 -7.99 15 17 C 0.09 2.37 11.94 84.86 1.01 3.38 15 18 N -0.35 -11.59 12.66 -57.51 -0.73 -12.32 15 19 N -0.32 -11.48 3.90 -192.50 -0.75 -12.23 15 20 C 0.12 4.36 10.92 83.33 0.91 5.27 15 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.06 1.86 7.62 -2.39 -0.02 1.84 15 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 25 H 0.19 6.28 7.65 -2.91 -0.02 6.26 15 26 H 0.18 4.18 8.06 -2.91 -0.02 4.15 15 27 H 0.24 3.42 8.06 -2.91 -0.02 3.40 15 28 H 0.19 5.67 7.94 -2.91 -0.02 5.64 15 Total: -1.00 -64.00 247.19 5.07 -58.93 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.14 Total: 12.31 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.28 Total: -12.77 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.20 Total: -100.01 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.85 Total: 41.54 kcal Total: -64.00 5.07 -58.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.057 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds