Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.40246 * 120.27051 * 299.72723 * 12 2 1 14 14 N 1.31220 * 120.27951 * 179.68915 * 13 12 2 15 15 C 1.33977 * 120.80808 * 0.60381 * 14 13 12 16 16 C 1.38866 * 132.57624 * 179.65107 * 15 14 13 17 17 C 1.38663 * 107.65424 * 180.02562 * 16 15 14 18 18 N 1.31421 * 108.98462 * 359.97438 * 17 16 15 19 19 N 1.37163 * 120.54350 * 359.67570 * 15 14 13 20 20 C 1.35527 * 120.27453 * 120.00365 * 12 2 1 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 25 25 H 1.07995 * 119.86072 * 359.97438 * 13 12 2 26 26 H 1.08004 * 126.17207 * 359.97438 * 16 15 14 27 27 H 1.07994 * 125.50868 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.43973 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 1.7017 -2.0546 -1.4554 14 7 2.1339 -2.6715 -2.5298 15 6 2.9054 -2.0362 -3.4222 16 6 3.4925 -2.4414 -4.6136 17 6 4.1907 -1.3593 -5.1277 18 7 4.0532 -0.3363 -4.3143 19 7 3.2538 -0.7232 -3.2329 20 6 2.8119 -0.0570 -2.1262 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8912 -0.5369 4.4374 25 1 1.0849 -2.5829 -0.7435 26 1 3.4193 -3.4226 -5.0590 27 1 4.7554 -1.3572 -6.0483 28 1 3.0802 0.9768 -1.9665 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 116.078961 kcal Electronic energy + Delta-G solvation = -13945.374451 eV Core-core repulsion = 11577.688950 eV Total energy + Delta-G solvation = -2367.685502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89944 -38.06654 -34.91549 -33.38437 -31.84066 -29.50634 -28.44040 -25.27387 -24.33331 -23.35717 -21.23599 -20.24696 -18.06644 -16.82553 -16.33288 -15.69338 -15.50418 -14.79867 -13.93535 -13.60336 -13.10552 -12.96175 -12.64039 -12.45012 -12.21995 -11.54730 -11.43170 -10.98119 -10.73682 -10.55114 -10.35118 -9.67672 -9.55183 -9.26384 -8.86144 -8.71762 -7.51341 -6.25773 -4.29455 0.96473 1.35841 2.44483 2.91056 3.14659 3.24269 3.28454 3.85452 4.23289 4.27381 4.49056 4.92683 5.05236 5.27905 5.46622 5.67794 5.72290 5.91103 6.08324 6.16527 6.32106 6.40156 6.51787 6.67580 6.73110 6.91301 7.12231 7.45318 7.74577 8.01639 8.26895 8.75071 9.32817 10.86407 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.055482 B = 0.007757 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.545016 B = 3608.958318 C = 3714.888658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 H 0.043 0.957 4 C -0.522 4.522 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.296 1.296 11 H -0.266 1.266 12 C -0.121 4.121 13 C 0.207 3.793 14 N -0.480 5.480 15 C 0.257 3.743 16 C -0.286 4.286 17 C 0.078 3.922 18 N -0.331 5.331 19 N -0.302 5.302 20 C 0.126 3.874 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.058 0.942 24 H 0.267 0.733 25 H 0.184 0.816 26 H 0.154 0.846 27 H 0.190 0.810 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 0.850 -11.082 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.061 0.939 4 C -0.560 4.560 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.191 1.191 12 C -0.127 4.127 13 C 0.024 3.976 14 N -0.191 5.191 15 C 0.027 3.973 16 C -0.318 4.318 17 C -0.099 4.099 18 N -0.156 5.156 19 N -0.072 5.072 20 C -0.007 4.007 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.201 0.799 26 H 0.172 0.828 27 H 0.207 0.793 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.821 1.202 -11.136 11.230 hybrid contribution -0.513 0.758 0.369 0.987 sum -1.333 1.960 -10.766 11.024 Atomic orbital electron populations 1.22201 0.97616 1.01447 0.99274 1.18198 0.92339 0.96167 0.89678 0.93882 1.20829 1.33106 1.14234 0.87817 0.90401 1.24962 0.95467 0.96576 0.95642 1.69873 1.44749 1.39991 0.98112 0.86848 0.80630 0.83517 0.77214 1.20295 1.22312 1.19067 1.20893 0.98433 0.95831 0.97508 1.23558 0.91640 0.91373 0.91016 1.68324 1.11975 1.35365 1.03414 1.20847 0.97179 0.82428 0.96868 1.20791 1.11525 1.02035 0.97425 1.23646 0.97384 0.90280 0.98603 1.77776 1.17224 1.23213 0.97382 1.47126 1.33302 1.10650 1.16162 1.21940 0.95699 0.99370 0.83688 0.93358 0.94799 0.92307 0.92253 0.79924 0.82794 0.79283 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.50 37.16 0.32 -2.45 15 2 C 0.06 1.15 2.07 -92.92 -0.19 0.96 15 3 H 0.04 0.88 6.94 -51.93 -0.36 0.52 15 4 C -0.52 -13.07 8.84 -34.44 -0.30 -13.37 15 5 H 0.08 2.15 7.85 -52.49 -0.41 1.73 15 6 C 0.08 2.02 5.45 -17.82 -0.10 1.92 15 7 N -0.89 -25.38 13.96 55.43 0.77 -24.60 15 8 Si 0.89 19.96 24.37 -169.99 -4.14 15.81 15 9 H -0.28 -6.03 6.86 56.52 0.39 -5.64 15 10 H -0.30 -6.80 7.11 56.52 0.40 -6.40 15 11 H -0.27 -5.62 6.54 56.52 0.37 -5.25 15 12 C -0.12 -2.25 4.69 -104.83 -0.49 -2.74 15 13 C 0.21 3.78 9.99 -17.06 -0.17 3.61 15 14 N -0.48 -9.01 10.48 -12.21 -0.13 -9.14 15 15 C 0.26 4.78 7.92 -155.52 -1.23 3.55 15 16 C -0.29 -4.52 10.91 -39.19 -0.43 -4.95 15 17 C 0.08 1.12 11.94 -17.57 -0.21 0.91 15 18 N -0.33 -5.77 12.66 30.47 0.39 -5.39 15 19 N -0.30 -5.62 3.90 -12.20 -0.05 -5.67 15 20 C 0.13 2.25 10.92 -16.43 -0.18 2.07 15 21 H 0.05 0.95 3.25 -51.93 -0.17 0.79 15 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.06 1.03 7.45 -51.93 -0.39 0.64 15 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 25 H 0.18 3.06 7.64 -52.49 -0.40 2.66 15 26 H 0.15 2.05 8.06 -52.48 -0.42 1.63 15 27 H 0.19 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.17 2.66 7.94 -52.49 -0.42 2.24 15 LS Contribution 240.76 15.07 3.63 3.63 Total: -1.00 -29.46 240.76 -5.12 -34.58 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.59 Total: 1.27 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.99 Total: -10.49 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.98 Total: -44.80 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.14 Total: 15.81 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.46 -5.12 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.660 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds