Wall clock time and date at job start Mon Mar 30 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.40246 * 120.27051 * 299.72723 * 12 2 1 14 14 N 1.31220 * 120.27951 * 179.68915 * 13 12 2 15 15 C 1.33977 * 120.80808 * 0.60381 * 14 13 12 16 16 C 1.38866 * 132.57624 * 179.65107 * 15 14 13 17 17 C 1.38663 * 107.65424 * 180.02562 * 16 15 14 18 18 N 1.31421 * 108.98462 * 359.97438 * 17 16 15 19 19 N 1.37163 * 120.54350 * 359.67570 * 15 14 13 20 20 C 1.35527 * 120.27453 * 120.00365 * 12 2 1 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 25 25 H 1.07995 * 119.86072 * 359.97438 * 13 12 2 26 26 H 1.08004 * 126.17207 * 359.97438 * 16 15 14 27 27 H 1.07994 * 125.50868 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.43973 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 1.7017 -2.0546 -1.4554 14 7 2.1339 -2.6715 -2.5298 15 6 2.9054 -2.0362 -3.4222 16 6 3.4925 -2.4414 -4.6136 17 6 4.1907 -1.3593 -5.1277 18 7 4.0532 -0.3363 -4.3143 19 7 3.2538 -0.7232 -3.2329 20 6 2.8119 -0.0570 -2.1262 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8912 -0.5369 4.4374 25 1 1.0849 -2.5829 -0.7435 26 1 3.4193 -3.4226 -5.0590 27 1 4.7554 -1.3572 -6.0483 28 1 3.0802 0.9768 -1.9665 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:31 Heat of formation + Delta-G solvation = 97.289798 kcal Electronic energy + Delta-G solvation = -13946.189211 eV Core-core repulsion = 11577.688950 eV Total energy + Delta-G solvation = -2368.500261 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.21706 -39.43941 -36.50097 -34.82512 -33.64559 -30.90247 -29.79407 -27.07917 -25.70468 -24.80297 -22.55997 -21.76498 -19.53335 -18.46336 -17.85694 -17.19183 -16.89459 -16.37505 -15.21681 -15.06202 -14.79101 -14.39603 -14.07296 -13.96915 -13.68640 -13.08393 -13.03185 -12.50344 -12.19232 -12.07084 -11.92382 -11.37561 -11.25245 -10.75962 -10.72006 -10.23901 -8.82942 -8.26907 -6.33777 -0.39970 -0.00950 1.13808 1.38626 1.43933 1.53495 1.71189 2.35907 2.46597 2.94614 3.09033 3.26710 3.58817 3.94146 4.11711 4.36463 4.44855 4.56834 4.71635 4.78640 4.93032 4.95481 5.13750 5.17306 5.43861 5.57070 5.62963 5.65592 6.26612 6.47609 6.64277 6.72759 7.31998 8.89097 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.055482 B = 0.007757 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.545016 B = 3608.958318 C = 3714.888658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.051 0.949 4 C -0.515 4.515 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.307 1.307 11 H -0.239 1.239 12 C -0.137 4.137 13 C 0.201 3.799 14 N -0.492 5.492 15 C 0.223 3.777 16 C -0.283 4.283 17 C 0.093 3.907 18 N -0.350 5.350 19 N -0.318 5.318 20 C 0.133 3.867 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.266 0.734 25 H 0.187 0.813 26 H 0.178 0.822 27 H 0.240 0.760 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 1.989 -13.473 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.041 3.959 3 H 0.069 0.931 4 C -0.553 4.553 5 H 0.055 0.945 6 C -0.179 4.179 7 N -0.586 5.586 8 Si 0.774 3.226 9 H -0.190 1.190 10 H -0.235 1.235 11 H -0.162 1.162 12 C -0.143 4.143 13 C 0.018 3.982 14 N -0.203 5.203 15 C -0.005 4.005 16 C -0.314 4.314 17 C -0.083 4.083 18 N -0.175 5.175 19 N -0.088 5.088 20 C -0.001 4.001 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.204 0.796 26 H 0.195 0.805 27 H 0.256 0.744 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.187 2.337 -13.564 13.815 hybrid contribution -0.264 0.295 0.943 1.023 sum -1.451 2.632 -12.621 12.974 Atomic orbital electron populations 1.22136 0.95821 1.02202 1.00235 1.18056 0.93753 0.95897 0.88224 0.93068 1.21067 1.31488 1.12849 0.89885 0.94527 1.25802 0.97052 0.99792 0.95237 1.70036 1.47369 1.42421 0.98760 0.85878 0.79225 0.80009 0.77443 1.18982 1.23505 1.16217 1.20644 1.00030 0.96015 0.97573 1.23620 0.91883 0.91527 0.91164 1.68312 1.12558 1.35700 1.03754 1.21382 0.98169 0.83018 0.97975 1.21301 1.10337 1.03415 0.96306 1.24481 0.96064 0.88624 0.99162 1.77762 1.17445 1.24688 0.97613 1.47287 1.34096 1.10745 1.16722 1.22200 0.94415 1.00161 0.83276 0.94193 0.91759 0.91909 0.92459 0.79584 0.80453 0.74388 0.78894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 8.50 71.98 0.61 -4.52 15 2 C 0.06 2.42 2.07 -12.29 -0.03 2.39 15 3 H 0.05 1.96 6.94 -2.38 -0.02 1.95 15 4 C -0.51 -26.21 8.84 25.60 0.23 -25.98 15 5 H 0.04 2.11 7.85 -2.91 -0.02 2.09 15 6 C 0.02 1.02 5.45 84.65 0.46 1.48 15 7 N -0.95 -55.78 13.96 21.45 0.30 -55.48 15 8 Si 0.95 40.56 24.37 68.60 1.67 42.24 15 9 H -0.26 -10.70 6.86 99.48 0.68 -10.02 15 10 H -0.31 -13.59 7.11 99.48 0.71 -12.88 15 11 H -0.24 -9.09 6.54 99.48 0.65 -8.44 15 12 C -0.14 -5.00 4.69 -20.00 -0.09 -5.09 15 13 C 0.20 7.35 9.99 85.27 0.85 8.21 15 14 N -0.49 -18.29 10.48 -192.55 -2.02 -20.30 15 15 C 0.22 7.99 7.92 133.14 1.05 9.05 15 16 C -0.28 -8.12 10.91 22.52 0.25 -7.88 15 17 C 0.09 2.35 11.94 84.86 1.01 3.36 15 18 N -0.35 -11.29 12.66 -57.50 -0.73 -12.02 15 19 N -0.32 -11.31 3.90 -192.51 -0.75 -12.06 15 20 C 0.13 4.54 10.92 83.34 0.91 5.46 15 21 H 0.04 1.46 3.25 -2.38 -0.01 1.45 15 22 H 0.06 1.86 8.14 -2.38 -0.02 1.84 15 23 H 0.06 2.11 7.45 -2.39 -0.02 2.09 15 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 25 H 0.19 6.40 7.64 -2.91 -0.02 6.37 15 26 H 0.18 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.24 3.31 8.06 -2.91 -0.02 3.28 15 28 H 0.19 5.56 7.94 -2.91 -0.02 5.53 15 Total: -1.00 -64.57 240.76 4.82 -59.75 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.09 Total: 11.41 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.26 Total: -13.53 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -3.20 Total: -99.86 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.67 Total: 42.24 kcal Total: -64.57 4.82 -59.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.038 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds