Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31093 * 125.27317 * 2 1 4 4 C 1.33236 * 109.90205 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.31249 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47368 * 89.97265 * 5 4 3 7 7 H 1.07998 * 119.99525 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00272 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99899 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00346 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47529 * 89.99428 * 10 8 6 12 12 H 1.48497 * 109.47347 * 210.00062 * 10 8 6 13 13 H 1.48509 * 109.46908 * 329.99972 * 10 8 6 14 14 C 1.38098 * 107.37877 * 359.77987 * 4 3 2 15 15 C 1.40646 * 134.20003 * 179.53361 * 14 4 3 16 16 C 1.36149 * 118.93676 * 180.36144 * 15 14 4 17 17 C 1.40270 * 120.15857 * 0.27940 * 16 15 14 18 18 N 1.30509 * 121.26072 * 359.97438 * 17 16 15 19 19 N 1.34561 * 125.27445 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47245 * 270.00365 * 1 2 3 21 21 H 1.09001 * 109.46882 * 30.00474 * 1 2 3 22 22 H 1.09002 * 109.47003 * 150.00151 * 1 2 3 23 23 H 1.09002 * 109.47137 * 209.97014 * 5 4 3 24 24 H 1.08998 * 109.47114 * 329.97343 * 5 4 3 25 25 H 0.97000 * 119.99691 * 180.02562 * 9 8 6 26 26 H 1.08002 * 120.53607 * 0.64459 * 15 14 4 27 27 H 1.07999 * 119.91979 * 180.24854 * 16 15 14 28 28 H 1.08001 * 119.36545 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0703 0.0000 4 6 3.5487 0.7171 -0.0006 5 6 4.7311 1.6514 -0.0002 6 6 5.1252 1.9625 1.4207 7 1 4.5743 1.5274 2.2414 8 6 6.1884 2.8032 1.6730 9 7 6.8590 3.3334 0.6735 10 14 6.6765 3.1893 3.4342 11 1 7.6741 2.1935 3.9012 12 1 7.2684 4.5498 3.4970 13 1 5.4748 3.1317 4.3049 14 6 3.5971 -0.6630 0.0041 15 6 4.6391 -1.6077 -0.0023 16 6 4.3269 -2.9329 -0.0019 17 6 2.9848 -3.3407 -0.0011 18 7 2.0124 -2.4702 -0.0002 19 7 2.2841 -1.0985 0.0005 20 1 -0.3634 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 5.5680 1.1786 -0.5141 24 1 4.4644 2.5751 -0.5137 25 1 7.6073 3.9246 0.8510 26 1 5.6704 -1.2871 -0.0028 27 1 5.1145 -3.6719 -0.0027 28 1 2.7517 -4.3952 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260035380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = 104.154640 kcal Electronic energy + Delta-G solvation = -13851.489337 eV Core-core repulsion = 11483.286758 eV Total energy + Delta-G solvation = -2368.202579 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93103 -37.59880 -33.93881 -32.64168 -31.16914 -30.74331 -28.76463 -25.81796 -24.07713 -23.30898 -21.13466 -19.64081 -17.21299 -16.73673 -16.38538 -15.60018 -15.47558 -14.57629 -13.54226 -13.31727 -13.04145 -12.64243 -12.45314 -12.21099 -12.13954 -11.60950 -11.33423 -10.81428 -10.69731 -10.34746 -10.23571 -9.89097 -9.49642 -9.43428 -9.04734 -8.42210 -7.08296 -6.03802 -4.07543 0.92112 1.70643 2.44360 3.30964 3.37295 3.41988 3.48096 3.81132 4.45940 4.52657 4.80885 4.97472 5.13502 5.27983 5.32460 5.54373 5.73664 5.83983 5.91736 6.06238 6.15321 6.38381 6.50736 6.91080 7.26813 7.46906 7.58495 7.91129 8.09054 8.29349 8.57650 8.95146 9.55505 11.05555 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.008628 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.196393 B = 3244.359558 C = 3660.653639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.223 3.777 3 N -0.466 5.466 4 C 0.132 3.868 5 C 0.089 3.911 6 C -0.507 4.507 7 H 0.055 0.945 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C -0.102 4.102 15 C 0.048 3.952 16 C -0.258 4.258 17 C 0.145 3.855 18 N -0.294 5.294 19 N -0.288 5.288 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.263 0.737 26 H 0.154 0.846 27 H 0.140 0.860 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -11.904 -1.865 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 N -0.185 5.185 4 C -0.009 4.009 5 C 0.051 3.949 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C -0.208 4.208 15 C 0.020 3.980 16 C -0.280 4.280 17 C -0.049 4.049 18 N -0.103 5.103 19 N -0.059 5.059 20 H 0.095 0.905 21 H 0.107 0.893 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.172 0.828 27 H 0.158 0.842 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.749 -11.038 -1.911 13.621 hybrid contribution 1.544 -0.669 1.033 1.975 sum -6.205 -11.708 -0.878 13.279 Atomic orbital electron populations 1.20110 0.84770 1.03602 1.03251 1.23225 0.95728 0.78165 1.06405 1.70250 1.02848 1.25438 1.19992 1.22330 0.93396 0.89912 0.95221 1.17830 0.86495 0.92405 0.98214 1.20955 1.14115 1.28398 0.91151 0.92696 1.24954 0.96197 0.95636 0.97319 1.69950 1.20742 1.31919 1.30655 0.86512 0.78682 0.77665 0.84717 1.20615 1.21050 1.19860 1.19714 0.85010 0.96125 1.19951 1.20875 0.99207 0.91114 0.86780 1.21196 0.96786 0.96688 1.13339 1.23803 0.90575 0.99190 0.91373 1.75329 1.27869 0.85993 1.21071 1.46660 1.06767 1.03179 1.49252 0.90487 0.89320 0.90768 0.94518 0.93969 0.92756 0.82814 0.84213 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 36.01 0.38 -0.47 15 2 C 0.22 4.45 8.09 -155.36 -1.26 3.20 15 3 N -0.47 -10.90 11.19 -6.47 -0.07 -10.97 15 4 C 0.13 3.18 6.40 -82.03 -0.53 2.65 15 5 C 0.09 2.35 5.54 -29.03 -0.16 2.19 15 6 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 15 7 H 0.05 1.59 7.74 -52.49 -0.41 1.19 15 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 9 N -0.89 -26.18 13.29 55.43 0.74 -25.44 15 10 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 14 C -0.10 -2.17 6.82 -84.07 -0.57 -2.74 15 15 C 0.05 0.83 10.12 -39.42 -0.40 0.43 15 16 C -0.26 -3.49 10.03 -39.57 -0.40 -3.89 15 17 C 0.15 1.90 11.28 -17.35 -0.20 1.71 15 18 N -0.29 -4.91 11.92 30.65 0.37 -4.55 15 19 N -0.29 -5.74 4.01 -8.19 -0.03 -5.77 15 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 24 H 0.04 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 26 H 0.15 2.49 8.06 -52.49 -0.42 2.07 15 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.18 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 255.55 15.07 3.85 3.85 Total: -1.00 -33.19 255.55 -6.64 -39.82 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -2.92 Total: -3.50 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.54 Total: -10.08 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 1.00 Total: -46.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.19 -6.64 -39.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.979 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds