Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31093 * 125.27317 * 2 1 4 4 C 1.33236 * 109.90205 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.31249 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47368 * 89.97265 * 5 4 3 7 7 H 1.07998 * 119.99525 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00272 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99899 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00346 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47529 * 89.99428 * 10 8 6 12 12 H 1.48497 * 109.47347 * 210.00062 * 10 8 6 13 13 H 1.48509 * 109.46908 * 329.99972 * 10 8 6 14 14 C 1.38098 * 107.37877 * 359.77987 * 4 3 2 15 15 C 1.40646 * 134.20003 * 179.53361 * 14 4 3 16 16 C 1.36149 * 118.93676 * 180.36144 * 15 14 4 17 17 C 1.40270 * 120.15857 * 0.27940 * 16 15 14 18 18 N 1.30509 * 121.26072 * 359.97438 * 17 16 15 19 19 N 1.34561 * 125.27445 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47245 * 270.00365 * 1 2 3 21 21 H 1.09001 * 109.46882 * 30.00474 * 1 2 3 22 22 H 1.09002 * 109.47003 * 150.00151 * 1 2 3 23 23 H 1.09002 * 109.47137 * 209.97014 * 5 4 3 24 24 H 1.08998 * 109.47114 * 329.97343 * 5 4 3 25 25 H 0.97000 * 119.99691 * 180.02562 * 9 8 6 26 26 H 1.08002 * 120.53607 * 0.64459 * 15 14 4 27 27 H 1.07999 * 119.91979 * 180.24854 * 16 15 14 28 28 H 1.08001 * 119.36545 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0703 0.0000 4 6 3.5487 0.7171 -0.0006 5 6 4.7311 1.6514 -0.0002 6 6 5.1252 1.9625 1.4207 7 1 4.5743 1.5274 2.2414 8 6 6.1884 2.8032 1.6730 9 7 6.8590 3.3334 0.6735 10 14 6.6765 3.1893 3.4342 11 1 7.6741 2.1935 3.9012 12 1 7.2684 4.5498 3.4970 13 1 5.4748 3.1317 4.3049 14 6 3.5971 -0.6630 0.0041 15 6 4.6391 -1.6077 -0.0023 16 6 4.3269 -2.9329 -0.0019 17 6 2.9848 -3.3407 -0.0011 18 7 2.0124 -2.4702 -0.0002 19 7 2.2841 -1.0985 0.0005 20 1 -0.3634 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 5.5680 1.1786 -0.5141 24 1 4.4644 2.5751 -0.5137 25 1 7.6073 3.9246 0.8510 26 1 5.6704 -1.2871 -0.0028 27 1 5.1145 -3.6719 -0.0027 28 1 2.7517 -4.3952 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = 82.211081 kcal Electronic energy + Delta-G solvation = -13852.440881 eV Core-core repulsion = 11483.286758 eV Total energy + Delta-G solvation = -2369.154123 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.40968 -38.93371 -35.75638 -34.39899 -32.56856 -32.21211 -30.51682 -27.37472 -25.56800 -25.07751 -22.59662 -21.25763 -18.66403 -18.53966 -17.99446 -17.00673 -16.83364 -16.50979 -14.96260 -14.75296 -14.44444 -14.20050 -14.06338 -13.63942 -13.55168 -13.17554 -13.06363 -12.67978 -12.60008 -12.04957 -11.81364 -11.40550 -11.39546 -11.15349 -10.65277 -10.60504 -8.61906 -8.17188 -6.34365 -0.37628 0.38127 1.07928 1.38275 1.40746 1.51988 2.00558 2.32743 2.45138 3.08841 3.29327 3.44848 3.77691 3.91686 4.05391 4.39114 4.45152 4.60938 4.66534 4.82674 4.90923 5.09498 5.19583 5.24181 5.47038 5.57467 5.69658 5.74507 6.14966 6.72807 6.74201 7.00151 7.33175 8.88458 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.008628 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.196393 B = 3244.359558 C = 3660.653639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.208 3.792 3 N -0.504 5.504 4 C 0.067 3.933 5 C 0.105 3.895 6 C -0.526 4.526 7 H 0.042 0.958 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.275 1.275 14 C -0.096 4.096 15 C -0.006 4.006 16 C -0.203 4.203 17 C 0.154 3.846 18 N -0.305 5.305 19 N -0.295 5.295 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.024 0.976 24 H 0.004 0.996 25 H 0.268 0.732 26 H 0.153 0.847 27 H 0.192 0.808 28 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -15.301 -0.897 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 N -0.223 5.223 4 C -0.071 4.071 5 C 0.067 3.933 6 C -0.564 4.564 7 H 0.060 0.940 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.200 1.200 14 C -0.205 4.205 15 C -0.033 4.033 16 C -0.225 4.225 17 C -0.040 4.040 18 N -0.114 5.114 19 N -0.064 5.064 20 H 0.109 0.891 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.042 0.958 24 H 0.022 0.978 25 H 0.077 0.923 26 H 0.171 0.829 27 H 0.210 0.790 28 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -8.040 -14.429 -0.952 16.545 hybrid contribution 1.621 0.087 0.675 1.758 sum -6.419 -14.342 -0.277 15.715 Atomic orbital electron populations 1.20281 0.81173 1.05038 1.04542 1.24012 0.97462 0.77617 1.05975 1.70047 1.03064 1.28003 1.21193 1.21802 0.93088 0.91257 1.00997 1.17383 0.87633 0.91404 0.96847 1.21146 1.14530 1.28994 0.91738 0.94010 1.25834 0.95853 0.95079 1.01910 1.70062 1.21171 1.32307 1.32943 0.85428 0.78386 0.78056 0.79040 1.18900 1.20076 1.20002 1.19929 0.86911 0.95571 1.18092 1.21088 0.98522 0.92473 0.91265 1.21875 0.98516 0.95679 1.06441 1.24987 0.89735 1.01269 0.88048 1.75470 1.29334 0.84384 1.22191 1.46872 1.05947 1.04739 1.48817 0.89116 0.88368 0.88744 0.95766 0.97807 0.92281 0.82891 0.79044 0.73546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.45 10.51 71.24 0.75 -0.70 15 2 C 0.21 8.44 8.09 138.11 1.12 9.56 15 3 N -0.50 -24.95 11.19 -174.39 -1.95 -26.90 15 4 C 0.07 3.45 6.40 42.31 0.27 3.72 15 5 C 0.11 6.08 5.54 29.10 0.16 6.24 15 6 C -0.53 -31.63 9.09 25.60 0.23 -31.40 15 7 H 0.04 2.55 7.74 -2.91 -0.02 2.53 15 8 C 0.01 0.70 5.46 84.65 0.46 1.16 15 9 N -0.93 -56.11 13.29 21.45 0.28 -55.82 15 10 Si 0.97 45.22 29.54 68.60 2.03 47.25 15 11 H -0.26 -11.61 7.11 99.48 0.71 -10.91 15 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 14 C -0.10 -4.18 6.82 38.67 0.26 -3.92 15 15 C -0.01 -0.21 10.12 22.37 0.23 0.02 15 16 C -0.20 -4.51 10.03 22.28 0.22 -4.28 15 17 C 0.15 3.15 11.28 85.38 0.96 4.11 15 18 N -0.30 -9.15 11.92 -56.93 -0.68 -9.83 15 19 N -0.29 -11.57 4.01 -179.83 -0.72 -12.29 15 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 21 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.02 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.00 0.23 8.14 -2.39 -0.02 0.21 15 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 26 H 0.15 5.03 8.06 -2.91 -0.02 5.01 15 27 H 0.19 2.34 8.06 -2.91 -0.02 2.32 15 28 H 0.25 1.85 8.06 -2.91 -0.02 1.82 15 Total: -1.00 -78.11 255.55 4.79 -73.32 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: 1.16 Total: -0.22 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.67 Total: -15.50 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.07 Total: -104.85 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -78.11 4.79 -73.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.536 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds