Wall clock time and date at job start Mon Mar 30 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47554 * 2 1 4 4 C 1.50703 * 109.47230 * 239.99683 * 2 1 3 5 5 H 1.08001 * 119.99965 * 239.99915 * 4 2 1 6 6 C 1.37880 * 119.99807 * 60.00235 * 4 2 1 7 7 N 1.31516 * 119.99871 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47149 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47147 * 119.99924 * 8 6 4 11 11 H 1.48497 * 109.47420 * 240.00230 * 8 6 4 12 12 C 1.50702 * 109.47228 * 120.00005 * 2 1 3 13 13 C 1.36184 * 120.36954 * 60.02093 * 12 2 1 14 14 C 1.40268 * 119.62378 * 179.97438 * 13 12 2 15 15 C 1.35185 * 120.21604 * 359.97438 * 14 13 12 16 16 N 1.35930 * 120.56926 * 0.02562 * 15 14 13 17 17 N 1.40201 * 133.19915 * 180.33447 * 16 15 14 18 18 C 1.31252 * 107.09808 * 180.02562 * 17 16 15 19 19 N 1.32512 * 109.63836 * 359.62306 * 18 17 16 20 20 C 1.32850 * 109.67599 * 0.24328 * 19 18 17 21 21 H 1.09003 * 109.47554 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47431 * 300.00123 * 1 2 3 23 23 H 1.08999 * 109.47233 * 60.00145 * 1 2 3 24 24 H 0.96999 * 119.99059 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.18816 * 359.95548 * 13 12 2 26 26 H 1.08005 * 119.89217 * 179.97438 * 14 13 12 27 27 H 1.08005 * 119.71678 * 180.02562 * 15 14 13 28 28 H 1.08002 * 125.18537 * 179.89393 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1859 -4.8160 12 6 2.0323 -0.7104 1.2305 13 6 1.7083 -2.0143 1.4532 14 6 2.1849 -2.6604 2.6034 15 6 2.9619 -1.9933 3.4859 16 7 3.2904 -0.6918 3.2718 17 7 4.0636 0.2332 3.9876 18 6 4.0422 1.3585 3.3124 19 7 3.3152 1.2057 2.2150 20 6 2.8423 -0.0346 2.1608 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7090 1.1612 -3.4845 25 1 1.0876 -2.5477 0.7485 26 1 1.9302 -3.6942 2.7846 27 1 3.3248 -2.4988 4.3686 28 1 4.5444 2.2690 3.6042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057429.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:17 Heat of formation + Delta-G solvation = 93.891403 kcal Electronic energy + Delta-G solvation = -14100.393777 eV Core-core repulsion = 11731.746150 eV Total energy + Delta-G solvation = -2368.647626 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.55083 -39.02963 -36.69240 -34.27784 -32.25237 -31.77258 -29.71380 -27.20826 -25.25688 -24.33393 -23.34576 -21.44386 -18.59576 -18.55650 -17.61870 -17.04287 -16.93276 -16.49413 -15.26834 -15.00157 -14.62736 -13.67161 -13.59549 -13.48696 -13.18440 -12.90741 -12.87713 -12.76091 -12.21074 -12.09894 -11.71152 -11.41447 -11.05675 -10.88346 -10.44981 -10.40384 -8.95947 -8.07372 -6.22579 -0.06970 0.03133 1.28079 1.43605 1.46085 1.56749 1.82871 2.42957 2.60450 3.19204 3.22855 3.28646 3.96577 3.99174 4.21528 4.47681 4.62254 4.90083 4.96939 5.10746 5.21151 5.32120 5.38825 5.48824 5.57496 5.62713 5.90497 6.01389 6.07093 6.31023 6.86192 7.05832 7.45318 8.97805 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.009102 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.484039 B = 3075.518827 C = 3291.308725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.084 3.916 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.288 1.288 12 C -0.059 4.059 13 C -0.070 4.070 14 C -0.121 4.121 15 C 0.070 3.930 16 N -0.289 5.289 17 N -0.375 5.375 18 C 0.225 3.775 19 N -0.589 5.589 20 C 0.259 3.741 21 H 0.049 0.951 22 H 0.016 0.984 23 H 0.060 0.940 24 H 0.262 0.738 25 H 0.159 0.841 26 H 0.210 0.790 27 H 0.205 0.795 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -8.139 10.155 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.214 1.214 12 C -0.062 4.062 13 C -0.096 4.096 14 C -0.142 4.142 15 C -0.057 4.057 16 N -0.062 5.062 17 N -0.208 5.208 18 C -0.075 4.075 19 N -0.320 5.320 20 C 0.008 3.992 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.176 0.824 26 H 0.227 0.773 27 H 0.222 0.778 28 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.051 -7.700 10.518 13.195 hybrid contribution 0.246 0.218 -1.107 1.155 sum 2.297 -7.482 9.411 12.240 Atomic orbital electron populations 1.21641 0.96503 1.00074 0.99501 1.17556 0.93357 0.94251 0.88398 0.97943 1.21401 1.31328 1.12412 0.90695 0.92344 1.25747 0.95201 0.95633 1.01919 1.70048 1.37578 1.24026 1.23994 0.85502 0.78243 0.78595 0.79294 1.18816 1.20021 1.21426 1.19818 0.95919 0.95434 0.95061 1.21449 0.98132 0.92292 0.97727 1.21543 0.97334 1.02970 0.92379 1.22248 0.99910 0.79962 1.03583 1.47933 1.31477 1.10948 1.15884 1.78258 1.21158 1.00332 1.21043 1.26802 0.94678 0.98143 0.87880 1.70884 1.20739 1.16367 1.24039 1.21908 0.97900 0.89497 0.89901 0.93231 0.96522 0.92071 0.92922 0.82379 0.77307 0.77825 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.78 71.98 0.63 -5.11 15 2 C 0.08 4.32 2.50 -12.29 -0.03 4.29 15 3 H 0.00 0.14 7.76 -2.39 -0.02 0.12 15 4 C -0.52 -28.14 8.25 25.60 0.21 -27.93 15 5 H 0.06 3.06 7.60 -2.91 -0.02 3.04 15 6 C 0.01 0.75 5.30 84.65 0.45 1.20 15 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 15 8 Si 0.96 42.92 29.54 68.60 2.03 44.94 15 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 15 12 C -0.06 -2.53 4.76 -19.75 -0.09 -2.62 15 13 C -0.07 -2.28 8.74 22.29 0.19 -2.09 15 14 C -0.12 -2.72 9.99 22.06 0.22 -2.50 15 15 C 0.07 1.77 11.20 83.35 0.93 2.70 15 16 N -0.29 -10.41 3.90 -192.95 -0.75 -11.16 15 17 N -0.37 -13.43 12.78 -61.37 -0.78 -14.21 15 18 C 0.22 8.04 12.98 180.83 2.35 10.38 15 19 N -0.59 -26.60 10.98 -198.18 -2.18 -28.78 15 20 C 0.26 11.26 7.58 134.09 1.02 12.28 15 21 H 0.05 2.11 7.41 -2.39 -0.02 2.09 15 22 H 0.02 0.72 8.14 -2.39 -0.02 0.70 15 23 H 0.06 3.28 6.07 -2.39 -0.01 3.26 15 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 25 H 0.16 4.79 7.58 -2.91 -0.02 4.77 15 26 H 0.21 2.30 8.06 -2.91 -0.02 2.28 15 27 H 0.20 3.28 8.06 -2.91 -0.02 3.25 15 28 H 0.26 6.33 8.06 -2.91 -0.02 6.30 15 Total: -1.00 -71.71 246.96 5.60 -66.11 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.17 Total: 5.35 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.88 Total: -9.39 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.47 Total: -107.01 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.71 5.60 -66.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057429.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.998 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds