Wall clock time and date at job start Mon Mar 30 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48496 * 109.47157 * 270.00233 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00192 * 3 2 1 6 6 H 1.48496 * 109.47000 * 149.99975 * 3 2 1 7 7 C 1.37877 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00005 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46954 * 60.00389 * 9 7 2 11 11 N 1.46904 * 109.47308 * 300.00924 * 9 7 2 12 12 C 1.50695 * 109.47135 * 180.02562 * 9 7 2 13 13 C 1.38551 * 125.49583 * 125.00505 * 12 9 7 14 14 C 1.38926 * 107.56940 * 180.02562 * 13 12 9 15 15 C 1.40796 * 132.96816 * 179.97438 * 14 13 12 16 16 C 1.36061 * 119.22718 * 180.02562 * 15 14 13 17 17 C 1.40475 * 119.59304 * 359.97438 * 16 15 14 18 18 C 1.34940 * 120.42716 * 359.97438 * 17 16 15 19 19 N 1.36527 * 120.65973 * 0.02562 * 18 17 16 20 20 N 1.31487 * 125.49716 * 305.02969 * 12 9 7 21 21 H 0.97001 * 120.00367 * 0.02562 * 1 2 3 22 22 H 1.00896 * 110.99894 * 176.04758 * 11 9 7 23 23 H 1.00900 * 110.99452 * 299.99827 * 11 9 7 24 24 H 1.08005 * 126.21223 * 0.05018 * 13 12 9 25 25 H 1.08002 * 120.38844 * 0.03673 * 15 14 13 26 26 H 1.07997 * 120.20873 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.78748 * 179.72936 * 17 16 15 28 28 H 1.08001 * 119.66749 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 0.4069 -2.5772 1.1991 12 6 2.2304 -3.6445 -0.0005 13 6 2.2614 -4.6765 0.9234 14 6 3.3072 -5.5214 0.5735 15 6 3.8085 -6.7114 1.1349 16 6 4.8731 -7.3247 0.5504 17 6 5.4520 -6.7629 -0.5996 18 6 4.9586 -5.6223 -1.1256 19 7 3.8909 -4.9953 -0.5504 20 7 3.1936 -3.8255 -0.8771 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1570 -3.4139 1.1906 23 1 0.9651 -2.5259 2.0380 24 1 1.5935 -4.8016 1.7630 25 1 3.3532 -7.1325 2.0191 26 1 5.2707 -8.2379 0.9679 27 1 6.2999 -7.2448 -1.0636 28 1 5.4129 -5.2013 -2.0103 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:33 Heat of formation + Delta-G solvation = 84.194661 kcal Electronic energy + Delta-G solvation = -13804.869968 eV Core-core repulsion = 11435.801860 eV Total energy + Delta-G solvation = -2369.068109 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.80621 -38.46446 -36.11027 -33.92966 -33.19650 -31.31077 -29.07318 -28.15510 -25.11013 -23.97901 -23.09203 -20.90767 -18.61999 -18.17980 -17.42515 -16.73762 -16.53741 -16.30284 -16.01221 -15.42840 -15.04728 -14.30879 -14.08636 -13.60848 -13.09828 -12.81235 -12.68985 -12.52460 -12.39301 -11.93466 -11.54069 -11.38029 -11.16662 -10.59268 -10.00147 -9.12597 -8.48437 -8.01494 -6.21994 -0.04538 0.26981 1.40833 1.41544 1.51027 1.53347 1.86681 2.46759 2.56150 3.21260 3.43602 3.75657 3.97689 4.12822 4.24924 4.35781 4.59646 4.69532 4.82510 4.90896 5.17592 5.29202 5.33161 5.61536 5.70653 5.72687 6.04934 6.17428 6.52517 6.86386 7.02291 7.20225 7.48556 9.02828 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049012 B = 0.007533 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.150649 B = 3716.248951 C = 4081.182798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.037 3.963 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.036 0.964 9 C 0.297 3.703 10 H 0.019 0.981 11 N -0.803 5.803 12 C 0.086 3.914 13 C -0.320 4.320 14 C 0.087 3.913 15 C -0.131 4.131 16 C -0.070 4.070 17 C -0.151 4.151 18 C 0.074 3.926 19 N -0.292 5.292 20 N -0.364 5.364 21 H 0.259 0.741 22 H 0.317 0.683 23 H 0.328 0.672 24 H 0.159 0.841 25 H 0.168 0.832 26 H 0.185 0.815 27 H 0.197 0.803 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -16.124 2.123 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.054 0.946 9 C 0.184 3.816 10 H 0.036 0.964 11 N -0.330 5.330 12 C -0.073 4.073 13 C -0.349 4.349 14 C -0.033 4.033 15 C -0.150 4.150 16 C -0.093 4.093 17 C -0.172 4.172 18 C -0.051 4.051 19 N -0.059 5.059 20 N -0.189 5.189 21 H 0.068 0.932 22 H 0.129 0.871 23 H 0.140 0.860 24 H 0.176 0.824 25 H 0.186 0.814 26 H 0.203 0.797 27 H 0.214 0.786 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.330 -14.733 0.772 18.010 hybrid contribution 0.249 0.085 0.679 0.729 sum 10.580 -14.648 1.451 18.127 Atomic orbital electron populations 1.70207 1.06827 1.26667 1.47600 1.25651 0.95573 1.01735 0.93778 0.85664 0.78565 0.79752 0.78112 1.20244 1.20094 1.20130 1.20922 0.91585 0.90898 1.54382 0.94569 1.17326 0.86263 0.87451 0.90555 0.96358 1.59060 1.27286 1.42958 1.03669 1.24305 0.94539 0.96739 0.91706 1.21319 1.06728 0.99164 1.07709 1.20132 0.95788 0.97159 0.90171 1.20989 0.99161 0.92329 1.02557 1.21697 0.93311 1.00348 0.93951 1.21394 1.03109 0.94466 0.98258 1.22191 0.87496 0.95042 1.00336 1.46821 1.22077 1.17391 1.19573 1.77881 1.13028 1.00910 1.27102 0.93223 0.87080 0.86017 0.82386 0.81420 0.79733 0.78621 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.13 12.77 21.45 0.27 -52.85 15 2 C 0.04 2.14 5.39 84.65 0.46 2.60 15 3 Si 0.95 46.28 29.54 68.60 2.03 48.31 15 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 7 C -0.54 -32.41 8.68 25.60 0.22 -32.19 15 8 H 0.04 2.26 7.74 -2.91 -0.02 2.23 15 9 C 0.30 16.41 3.16 43.42 0.14 16.54 15 10 H 0.02 1.15 8.14 -2.38 -0.02 1.13 15 11 N -0.80 -39.61 7.98 -174.94 -1.40 -41.01 15 12 C 0.09 4.26 6.31 42.68 0.27 4.53 15 13 C -0.32 -13.16 9.89 22.51 0.22 -12.94 15 14 C 0.09 3.08 6.81 39.10 0.27 3.35 15 15 C -0.13 -3.05 10.11 22.39 0.23 -2.82 15 16 C -0.07 -1.12 10.07 22.31 0.22 -0.90 15 17 C -0.15 -2.54 9.98 22.06 0.22 -2.32 15 18 C 0.07 1.99 11.19 83.20 0.93 2.92 15 19 N -0.29 -11.29 3.90 -187.79 -0.73 -12.02 15 20 N -0.36 -17.99 12.61 -47.88 -0.60 -18.60 15 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 22 H 0.32 13.69 8.65 -89.70 -0.78 12.92 15 23 H 0.33 15.41 8.73 -89.69 -0.78 14.63 15 24 H 0.16 5.69 7.61 -2.91 -0.02 5.67 15 25 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 26 H 0.19 1.18 8.06 -2.91 -0.02 1.16 15 27 H 0.20 1.39 8.06 -2.91 -0.02 1.37 15 28 H 0.18 3.94 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -76.96 251.13 2.38 -74.59 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.37 Total: 22.79 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 3.18 Total: -21.22 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -2.46 Total: -124.47 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.96 2.38 -74.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.782 kcal (2) G-P(sol) polarization free energy of solvation -76.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds