Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48494 * 109.47303 * 270.00259 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00430 * 3 2 1 6 6 H 1.48504 * 109.46683 * 149.99965 * 3 2 1 7 7 C 1.37878 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00537 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99429 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.30841 * 125.37523 * 270.01839 * 10 9 7 12 12 C 1.33480 * 109.91769 * 179.97438 * 11 10 9 13 13 C 1.38062 * 107.59778 * 0.02562 * 12 11 10 14 14 C 1.40887 * 133.61965 * 179.97438 * 13 12 11 15 15 C 1.36592 * 119.09733 * 180.02562 * 14 13 12 16 16 N 1.39483 * 120.19538 * 180.02562 * 15 14 13 17 17 C 1.41364 * 119.60941 * 359.76628 * 15 14 13 18 18 C 1.34510 * 120.53560 * 0.49367 * 17 15 14 19 19 N 1.35888 * 125.38504 * 89.99899 * 10 9 7 20 20 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 21 21 H 1.08989 * 109.47158 * 59.99665 * 9 7 2 22 22 H 1.09003 * 109.46691 * 299.99347 * 9 7 2 23 23 H 1.07994 * 126.19960 * 179.97438 * 12 11 10 24 24 H 1.08002 * 120.45150 * 0.06962 * 14 13 12 25 25 H 0.96992 * 120.00039 * 0.02562 * 16 15 14 26 26 H 0.96998 * 119.99742 * 180.02562 * 16 15 14 27 27 H 1.07999 * 119.73418 * 180.24689 * 17 15 14 28 28 H 1.08002 * 119.66898 * 179.78124 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 7 4.2664 -3.3299 1.0640 12 6 4.6946 -4.5428 0.7073 13 6 4.7119 -4.5902 -0.6724 14 6 5.0637 -5.5846 -1.6064 15 6 4.9666 -5.3072 -2.9403 16 7 5.3085 -6.2750 -3.8848 17 6 4.5125 -4.0353 -3.3580 18 6 4.1855 -3.0954 -2.4531 19 7 4.2756 -3.3560 -1.1107 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8887 22 1 3.8745 -0.6801 -0.8912 23 1 4.9772 -5.3418 1.3766 24 1 5.4048 -6.5534 -1.2722 25 1 5.6158 -7.1481 -3.5951 26 1 5.2389 -6.0748 -4.8314 27 1 4.4312 -3.8152 -4.4122 28 1 3.8434 -2.1272 -2.7877 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = 81.444984 kcal Electronic energy + Delta-G solvation = -13807.745475 eV Core-core repulsion = 11438.558132 eV Total energy + Delta-G solvation = -2369.187343 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.98208 -37.66747 -34.35119 -33.33506 -31.56589 -30.02243 -29.53872 -26.03546 -23.36055 -22.86030 -21.34022 -20.00127 -17.48691 -16.89500 -16.88263 -15.99689 -15.10247 -15.05148 -14.23565 -14.03931 -13.48803 -12.99133 -12.70044 -12.41364 -12.03376 -11.77642 -11.42384 -10.78670 -10.65284 -10.54668 -10.08856 -9.48529 -9.40487 -8.88926 -8.62582 -8.45090 -6.40660 -6.10311 -4.10857 1.31828 1.92509 3.24892 3.27817 3.35428 3.38161 3.82443 3.85703 3.97995 4.37716 4.84199 5.15522 5.20162 5.36561 5.44391 5.54532 5.84205 6.11830 6.14245 6.29115 6.38499 6.76715 6.96277 7.04389 7.33319 7.48394 7.56818 7.73076 7.91405 8.45492 8.80487 8.94079 9.47371 11.02404 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.008060 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.932090 B = 3472.994117 C = 3792.150103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.066 3.934 10 C 0.225 3.775 11 N -0.456 5.456 12 C -0.057 4.057 13 C 0.022 3.978 14 C -0.194 4.194 15 C 0.200 3.800 16 N -0.876 5.876 17 C -0.197 4.197 18 C 0.120 3.880 19 N -0.386 5.386 20 H 0.265 0.735 21 H 0.053 0.947 22 H 0.026 0.974 23 H 0.167 0.833 24 H 0.131 0.869 25 H 0.397 0.603 26 H 0.395 0.605 27 H 0.141 0.859 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 -8.752 -8.886 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.027 3.973 10 C -0.032 4.032 11 N -0.169 5.169 12 C -0.208 4.208 13 C -0.086 4.086 14 C -0.221 4.221 15 C 0.094 3.906 16 N -0.416 5.416 17 C -0.221 4.221 18 C -0.003 4.003 19 N -0.060 5.060 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.185 0.815 24 H 0.149 0.851 25 H 0.225 0.775 26 H 0.223 0.777 27 H 0.159 0.841 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.729 -8.188 -7.994 15.686 hybrid contribution 0.397 0.175 -1.151 1.231 sum 11.126 -8.012 -9.145 16.481 Atomic orbital electron populations 1.69895 1.06251 1.27085 1.50168 1.24941 0.94766 0.98905 0.94348 0.86837 0.80667 0.83652 0.78619 1.20123 1.20960 1.18638 1.20852 0.87859 0.94880 1.51824 0.90846 1.18237 0.97482 0.83235 0.98330 1.24017 1.03464 0.97564 0.78152 1.69961 1.15344 1.03798 1.27836 1.22281 1.11433 0.96866 0.90202 1.19191 1.07683 0.86524 0.95180 1.19409 1.13689 0.99434 0.89573 1.17300 0.95053 0.88991 0.89249 1.42204 1.77262 1.15196 1.06970 1.20270 1.09216 0.92897 0.99692 1.21539 0.96972 1.00742 0.81018 1.43110 1.44405 1.12661 1.05838 0.92460 0.92888 0.95581 0.81540 0.85095 0.77502 0.77693 0.84116 0.81542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 15 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 15 7 C -0.52 -14.81 9.65 -34.44 -0.33 -15.14 15 8 H 0.07 2.37 7.98 -52.49 -0.42 1.95 15 9 C 0.07 1.63 4.50 -29.03 -0.13 1.50 15 10 C 0.22 5.31 7.18 -154.36 -1.11 4.20 15 11 N -0.46 -10.86 11.19 -9.90 -0.11 -10.97 15 12 C -0.06 -1.14 12.01 -16.90 -0.20 -1.35 15 13 C 0.02 0.42 6.80 -84.13 -0.57 -0.16 15 14 C -0.19 -2.94 9.95 -39.17 -0.39 -3.33 15 15 C 0.20 2.65 6.76 -83.78 -0.57 2.09 15 16 N -0.88 -7.82 9.08 32.42 0.29 -7.52 15 17 C -0.20 -2.67 9.84 -39.71 -0.39 -3.06 15 18 C 0.12 2.01 10.82 -16.54 -0.18 1.83 15 19 N -0.39 -7.90 2.97 -58.03 -0.17 -8.07 15 20 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 21 H 0.05 1.33 7.20 -51.94 -0.37 0.95 15 22 H 0.03 0.59 7.50 -51.93 -0.39 0.20 15 23 H 0.17 2.75 8.06 -52.49 -0.42 2.33 15 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.40 2.83 8.83 -40.82 -0.36 2.47 15 26 H 0.40 2.68 8.85 -40.82 -0.36 2.32 15 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.17 2.54 8.00 -52.49 -0.42 2.12 15 LS Contribution 249.25 15.07 3.76 3.76 Total: -1.00 -33.90 249.25 -6.86 -40.76 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.76 Total: 3.79 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.97 Total: -11.43 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.79 Total: -53.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.90 -6.86 -40.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.203 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds