Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48494 * 109.47303 * 270.00259 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00430 * 3 2 1 6 6 H 1.48504 * 109.46683 * 149.99965 * 3 2 1 7 7 C 1.37878 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00537 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99429 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.30841 * 125.37523 * 270.01839 * 10 9 7 12 12 C 1.33480 * 109.91769 * 179.97438 * 11 10 9 13 13 C 1.38062 * 107.59778 * 0.02562 * 12 11 10 14 14 C 1.40887 * 133.61965 * 179.97438 * 13 12 11 15 15 C 1.36592 * 119.09733 * 180.02562 * 14 13 12 16 16 N 1.39483 * 120.19538 * 180.02562 * 15 14 13 17 17 C 1.41364 * 119.60941 * 359.76628 * 15 14 13 18 18 C 1.34510 * 120.53560 * 0.49367 * 17 15 14 19 19 N 1.35888 * 125.38504 * 89.99899 * 10 9 7 20 20 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 21 21 H 1.08989 * 109.47158 * 59.99665 * 9 7 2 22 22 H 1.09003 * 109.46691 * 299.99347 * 9 7 2 23 23 H 1.07994 * 126.19960 * 179.97438 * 12 11 10 24 24 H 1.08002 * 120.45150 * 0.06962 * 14 13 12 25 25 H 0.96992 * 120.00039 * 0.02562 * 16 15 14 26 26 H 0.96998 * 119.99742 * 180.02562 * 16 15 14 27 27 H 1.07999 * 119.73418 * 180.24689 * 17 15 14 28 28 H 1.08002 * 119.66898 * 179.78124 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 7 4.2664 -3.3299 1.0640 12 6 4.6946 -4.5428 0.7073 13 6 4.7119 -4.5902 -0.6724 14 6 5.0637 -5.5846 -1.6064 15 6 4.9666 -5.3072 -2.9403 16 7 5.3085 -6.2750 -3.8848 17 6 4.5125 -4.0353 -3.3580 18 6 4.1855 -3.0954 -2.4531 19 7 4.2756 -3.3560 -1.1107 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8887 22 1 3.8745 -0.6801 -0.8912 23 1 4.9772 -5.3418 1.3766 24 1 5.4048 -6.5534 -1.2722 25 1 5.6158 -7.1481 -3.5951 26 1 5.2389 -6.0748 -4.8314 27 1 4.4312 -3.8152 -4.4122 28 1 3.8434 -2.1272 -2.7877 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = 57.126023 kcal Electronic energy + Delta-G solvation = -13808.800024 eV Core-core repulsion = 11438.558132 eV Total energy + Delta-G solvation = -2370.241893 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.44026 -38.89880 -35.59834 -35.37774 -33.21229 -31.32165 -31.19614 -27.58981 -24.83993 -24.56414 -22.71586 -21.57185 -19.06213 -18.69540 -18.09599 -17.24886 -16.62800 -16.19507 -16.17549 -15.28016 -15.09800 -14.59557 -14.26735 -13.84801 -13.61018 -13.49187 -12.71275 -12.46030 -12.43832 -12.13259 -11.91495 -11.68283 -11.02732 -10.80433 -10.30896 -9.62116 -8.31709 -7.73128 -6.38998 0.07573 0.56784 1.37296 1.42323 1.54375 1.87804 2.27129 2.35618 2.66569 2.92472 3.02122 3.63449 3.84583 4.00869 4.15905 4.22755 4.65192 4.69322 4.81871 4.94792 5.00356 5.12583 5.27836 5.46763 5.68493 5.88912 6.17409 6.40648 6.54406 6.65408 7.03815 7.22805 7.24379 8.85639 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.008060 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.932090 B = 3472.994117 C = 3792.150103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.523 4.523 8 H 0.016 0.984 9 C 0.079 3.921 10 C 0.168 3.832 11 N -0.489 5.489 12 C -0.095 4.095 13 C 0.035 3.965 14 C -0.218 4.218 15 C 0.222 3.778 16 N -0.850 5.850 17 C -0.170 4.170 18 C 0.076 3.924 19 N -0.388 5.388 20 H 0.270 0.730 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.192 0.808 24 H 0.159 0.841 25 H 0.411 0.589 26 H 0.412 0.588 27 H 0.186 0.814 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.152 -9.350 -11.644 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.562 4.562 8 H 0.035 0.965 9 C 0.040 3.960 10 C -0.087 4.087 11 N -0.203 5.203 12 C -0.246 4.246 13 C -0.075 4.075 14 C -0.246 4.246 15 C 0.112 3.888 16 N -0.391 5.391 17 C -0.193 4.193 18 C -0.045 4.045 19 N -0.062 5.062 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.209 0.791 24 H 0.177 0.823 25 H 0.241 0.759 26 H 0.243 0.757 27 H 0.203 0.797 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.853 -8.821 -10.812 18.971 hybrid contribution -0.251 0.070 -0.525 0.586 sum 12.603 -8.751 -11.337 19.077 Atomic orbital electron populations 1.70059 1.08434 1.28566 1.51551 1.25965 0.95654 1.03398 0.93398 0.85608 0.79347 0.77471 0.79991 1.17603 1.20713 1.17165 1.20958 0.90262 0.92903 1.52068 0.96543 1.17945 0.94357 0.85006 0.98705 1.23525 1.07790 0.97839 0.79592 1.69788 1.15900 1.05463 1.29161 1.22735 1.13472 0.96691 0.91658 1.19732 1.05575 0.86648 0.95509 1.19692 1.15256 0.99827 0.89835 1.17432 0.92481 0.89482 0.89428 1.42205 1.74977 1.14764 1.07175 1.20824 1.05401 0.91833 1.01209 1.22020 0.99748 1.02641 0.80078 1.43125 1.43881 1.12624 1.06559 0.92076 0.93715 0.93319 0.79111 0.82328 0.75878 0.75748 0.79677 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 15 2 C 0.01 0.79 5.47 84.65 0.46 1.26 15 3 Si 0.95 43.41 27.47 68.60 1.88 45.29 15 4 H -0.25 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 15 7 C -0.52 -31.61 9.65 25.60 0.25 -31.36 15 8 H 0.02 1.13 7.98 -2.91 -0.02 1.11 15 9 C 0.08 4.01 4.50 29.10 0.13 4.15 15 10 C 0.17 8.29 7.18 137.76 0.99 9.28 15 11 N -0.49 -24.43 11.19 -185.24 -2.07 -26.51 15 12 C -0.09 -3.93 12.01 84.40 1.01 -2.92 15 13 C 0.03 1.31 6.80 38.77 0.26 1.57 15 14 C -0.22 -6.02 9.95 22.53 0.22 -5.80 15 15 C 0.22 4.92 6.76 38.31 0.26 5.18 15 16 N -0.85 -10.43 9.08 -51.33 -0.47 -10.89 15 17 C -0.17 -3.93 9.84 22.19 0.22 -3.71 15 18 C 0.08 2.47 10.82 83.03 0.90 3.37 15 19 N -0.39 -16.02 2.97 -337.52 -1.00 -17.02 15 20 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 21 H 0.04 2.30 7.20 -2.39 -0.02 2.28 15 22 H 0.05 2.20 7.50 -2.39 -0.02 2.18 15 23 H 0.19 6.43 8.06 -2.91 -0.02 6.41 15 24 H 0.16 3.40 8.06 -2.91 -0.02 3.38 15 25 H 0.41 3.57 8.83 -92.71 -0.82 2.75 15 26 H 0.41 3.02 8.85 -92.71 -0.82 2.20 15 27 H 0.19 2.61 8.06 -2.91 -0.02 2.59 15 28 H 0.17 5.15 8.00 -2.91 -0.02 5.12 15 Total: -1.00 -79.22 249.25 2.85 -76.36 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -0.50 Total: 11.29 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.71 Total: -19.00 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.24 Total: -113.95 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -79.22 2.85 -76.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.489 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds