Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99776 * 2 1 4 4 H 1.48507 * 109.47290 * 270.00132 * 3 2 1 5 5 H 1.48494 * 109.47510 * 30.00382 * 3 2 1 6 6 H 1.48500 * 109.47077 * 150.00433 * 3 2 1 7 7 C 1.37873 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00276 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00103 * 180.27381 * 7 2 1 10 10 C 1.50697 * 109.47382 * 179.72740 * 9 7 2 11 11 C 1.38258 * 119.99495 * 265.60874 * 10 9 7 12 12 C 1.38217 * 119.99757 * 179.74652 * 11 10 9 13 13 C 1.38258 * 119.99645 * 0.52280 * 12 11 10 14 14 C 1.38217 * 120.00058 * 359.75260 * 13 12 11 15 15 C 1.38213 * 120.00162 * 85.87899 * 10 9 7 16 16 C 1.50694 * 120.00145 * 0.02562 * 15 10 9 17 17 N 1.46902 * 115.54951 * 275.52635 * 16 15 10 18 18 C 1.53002 * 117.50170 * 129.81778 * 16 15 10 19 19 C 1.53000 * 117.50137 * 61.19291 * 16 15 10 20 20 H 0.96999 * 120.00419 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47047 * 299.72355 * 9 7 2 22 22 H 1.09000 * 109.46823 * 59.72363 * 9 7 2 23 23 H 1.08000 * 120.00278 * 359.97438 * 11 10 9 24 24 H 1.08004 * 120.00440 * 180.29807 * 12 11 10 25 25 H 1.08002 * 119.99772 * 179.76760 * 13 12 11 26 26 H 1.08002 * 119.99851 * 179.97438 * 14 13 12 27 27 H 1.00902 * 111.00043 * 325.58836 * 17 16 15 28 28 H 1.00909 * 110.99967 * 89.53573 * 17 16 15 29 29 H 1.09002 * 117.49472 * 0.02562 * 18 16 15 30 30 H 1.08999 * 117.49747 * 145.01802 * 18 16 15 31 31 H 1.09003 * 117.50615 * 214.97999 * 19 16 15 32 32 H 1.09001 * 117.49776 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0057 10 6 4.0138 -2.6149 0.0105 11 6 4.3257 -3.2337 1.2069 12 6 4.7814 -4.5385 1.2118 13 6 4.9357 -5.2213 0.0195 14 6 4.6293 -4.6007 -1.1769 15 6 4.1680 -3.2974 -1.1814 16 6 3.8344 -2.6207 -2.4858 17 7 2.4203 -2.6682 -2.8808 18 6 4.8817 -2.6782 -3.5997 19 6 4.6289 -1.3661 -2.8544 20 1 -0.4851 0.8400 0.0004 21 1 3.8785 -0.6820 -0.8839 22 1 3.8711 -0.6785 0.8962 23 1 4.2097 -2.6987 2.1379 24 1 5.0205 -5.0236 2.1467 25 1 5.2954 -6.2396 0.0230 26 1 4.7502 -5.1339 -2.1083 27 1 1.9930 -3.5353 -2.5915 28 1 1.9152 -1.8759 -2.5128 29 1 5.8119 -3.2060 -3.3891 30 1 4.5215 -2.7516 -4.6259 31 1 4.1025 -0.5762 -3.3902 32 1 5.3933 -1.0305 -2.1535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = 40.169308 kcal Electronic energy + Delta-G solvation = -14563.853086 eV Core-core repulsion = 12296.416238 eV Total energy + Delta-G solvation = -2267.436848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41779 -36.56112 -33.45913 -31.46831 -30.39099 -29.92793 -27.60508 -23.26384 -22.72493 -21.66144 -20.42334 -18.98521 -16.83679 -16.25083 -15.15038 -14.82363 -14.49153 -14.23397 -13.94766 -13.44057 -12.92208 -12.38959 -12.33217 -12.00747 -11.70868 -11.29124 -11.03280 -10.81383 -10.60126 -10.19315 -10.10357 -10.00211 -9.53425 -9.27861 -8.62236 -8.39692 -8.06027 -7.77577 -6.13981 -4.12963 1.89234 2.02410 3.24326 3.33022 3.35451 4.26692 4.36117 4.36325 4.96973 5.11276 5.19649 5.39079 5.48188 5.52731 5.65272 5.91035 6.06026 6.09612 6.19655 6.21474 6.33531 6.52173 6.60095 6.64223 6.87820 6.99446 7.04078 7.09535 7.54370 7.56675 7.66744 7.88702 8.19015 8.42722 8.89206 9.46648 10.98022 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.011866 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.547841 B = 2359.212270 C = 2845.857079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.509 4.509 8 H 0.071 0.929 9 C 0.005 3.995 10 C -0.018 4.018 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.149 4.149 14 C -0.107 4.107 15 C -0.085 4.085 16 C 0.106 3.894 17 N -0.806 5.806 18 C -0.170 4.170 19 C -0.164 4.164 20 H 0.265 0.735 21 H 0.037 0.963 22 H 0.023 0.977 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.339 0.661 28 H 0.366 0.634 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.585 -5.638 -2.390 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.547 4.547 8 H 0.090 0.910 9 C -0.032 4.032 10 C -0.019 4.019 11 C -0.145 4.145 12 C -0.139 4.139 13 C -0.167 4.167 14 C -0.126 4.126 15 C -0.087 4.087 16 C 0.012 3.988 17 N -0.336 5.336 18 C -0.208 4.208 19 C -0.201 4.201 20 H 0.074 0.926 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.135 0.865 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.184 0.816 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.649 -5.432 -3.158 11.514 hybrid contribution 0.071 0.783 1.202 1.436 sum 9.720 -4.649 -1.955 10.951 Atomic orbital electron populations 1.69889 1.06161 1.27036 1.50282 1.24952 0.94653 0.98851 0.94428 0.86872 0.80437 0.83900 0.78769 1.19978 1.21350 1.19065 1.20802 0.88000 0.94342 1.51592 0.91041 1.18980 0.97663 0.88745 0.97787 1.20155 0.92399 0.97858 0.91484 1.21070 1.00476 0.94943 0.98003 1.21043 1.00407 0.94985 0.97497 1.20889 1.03596 0.99461 0.92750 1.20880 0.99641 0.94507 0.97550 1.19493 1.01132 0.94102 0.93928 1.19546 0.88755 1.00449 0.90057 1.58920 1.00568 1.09263 1.64848 1.23192 0.99355 1.00866 0.97431 1.23023 1.02570 0.91630 1.02891 0.92550 0.94508 0.95909 0.86456 0.87013 0.87058 0.86845 0.84981 0.81635 0.89548 0.88718 0.88532 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.96 55.43 0.77 -25.44 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.51 -13.53 8.37 -34.44 -0.29 -13.82 16 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 9 C 0.01 0.12 3.68 -29.04 -0.11 0.01 16 10 C -0.02 -0.38 5.05 -104.63 -0.53 -0.91 16 11 C -0.13 -2.40 9.68 -39.58 -0.38 -2.79 16 12 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 13 C -0.15 -2.32 10.05 -39.58 -0.40 -2.71 16 14 C -0.11 -1.78 9.44 -39.58 -0.37 -2.16 16 15 C -0.08 -1.60 5.10 -104.63 -0.53 -2.13 16 16 C 0.11 1.93 2.03 -132.75 -0.27 1.66 16 17 N -0.81 -15.49 9.75 -0.19 0.00 -15.49 16 18 C -0.17 -2.65 9.89 -26.73 -0.26 -2.92 16 19 C -0.16 -2.85 8.05 -26.73 -0.22 -3.06 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.04 0.83 4.35 -51.92 -0.23 0.61 16 22 H 0.02 0.53 7.11 -51.93 -0.37 0.17 16 23 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 24 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 27 H 0.34 6.33 8.90 -39.29 -0.35 5.98 16 28 H 0.37 7.99 7.75 -39.29 -0.30 7.68 16 29 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.09 1.56 7.67 -51.93 -0.40 1.16 16 LS Contribution 267.48 15.07 4.03 4.03 Total: -1.00 -28.04 267.48 -7.91 -35.96 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.19 Total: 14.07 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.86 Total: -29.28 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.77 Total: -40.94 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.04 -7.91 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.125 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds