Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46790 * 2 1 4 4 C 1.50701 * 109.47132 * 119.99935 * 2 1 3 5 5 H 1.08001 * 119.99535 * 114.35796 * 4 2 1 6 6 C 1.37871 * 120.00126 * 294.36269 * 4 2 1 7 7 N 1.31513 * 119.99853 * 156.89483 * 6 4 2 8 8 Si 1.86797 * 120.00272 * 336.89775 * 6 4 2 9 9 H 1.48494 * 109.47563 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.46745 * 300.00203 * 8 6 4 11 11 H 1.48503 * 109.46990 * 59.99758 * 8 6 4 12 12 C 1.50702 * 109.47037 * 240.00271 * 2 1 3 13 13 N 1.31136 * 120.15122 * 299.71828 * 12 2 1 14 14 C 1.33520 * 121.36981 * 179.76335 * 13 12 2 15 15 C 1.35000 * 121.25151 * 0.52448 * 14 13 12 16 16 N 1.36685 * 119.74189 * 359.74591 * 15 14 13 17 17 C 1.36044 * 133.72723 * 179.97438 * 16 15 14 18 18 C 1.35464 * 107.15631 * 180.02562 * 17 16 15 19 19 N 1.33340 * 108.60904 * 359.97438 * 18 17 16 20 20 C 1.32310 * 109.13711 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.47128 * 53.20291 * 1 2 3 22 22 H 1.09001 * 109.47164 * 173.19567 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.19540 * 1 2 3 24 24 H 0.96997 * 120.00377 * 354.93416 * 7 6 4 25 25 H 1.08000 * 119.37268 * 180.26990 * 14 13 12 26 26 H 1.07996 * 120.13120 * 179.72211 * 15 14 13 27 27 H 1.07993 * 126.42444 * 0.02562 * 17 16 15 28 28 H 1.07997 * 125.69305 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8082 -0.9528 3.5401 8 14 1.4651 1.6532 2.6648 9 1 1.2465 1.9738 4.0981 10 1 2.6302 2.4221 2.1582 11 1 0.2548 2.0177 1.8853 12 6 2.0323 -0.7104 -1.2305 13 7 1.7219 -1.9674 -1.4383 14 6 2.1497 -2.6190 -2.5223 15 6 2.9282 -2.0115 -3.4428 16 7 3.2855 -0.7033 -3.2718 17 6 4.0377 0.1685 -3.9963 18 6 4.0427 1.3453 -3.3254 19 7 3.3139 1.2065 -2.2175 20 6 2.8415 -0.0281 -2.1608 21 1 -0.3633 0.6156 -0.8229 22 1 -0.3633 -1.0204 -0.1218 23 1 -0.3633 0.4047 0.9445 24 1 1.9076 -1.9122 3.4375 25 1 1.8710 -3.6528 -2.6633 26 1 3.2677 -2.5571 -4.3108 27 1 4.5373 -0.0387 -4.9310 28 1 4.5513 2.2458 -3.6365 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081445.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = 99.906171 kcal Electronic energy + Delta-G solvation = -14180.487595 eV Core-core repulsion = 11812.100789 eV Total energy + Delta-G solvation = -2368.386806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.70956 -38.17444 -35.18328 -33.06034 -31.31399 -29.59354 -28.90019 -24.89128 -24.06943 -22.98135 -21.69926 -19.91221 -18.28189 -17.39128 -16.34109 -15.80122 -15.29369 -14.71080 -14.04595 -13.55968 -13.46369 -12.94727 -12.65930 -12.44380 -11.81032 -11.39517 -10.97243 -10.77175 -10.40381 -10.01685 -9.80241 -9.73668 -9.20733 -8.97196 -8.63642 -8.13279 -7.74539 -6.41695 -3.99925 0.97786 1.56051 2.73362 3.10562 3.49164 3.55821 3.71458 4.03907 4.44842 4.56478 4.57853 4.64862 4.93873 5.27055 5.37294 5.48448 5.54755 5.82077 6.12797 6.45843 6.50743 6.69774 6.77668 6.90740 7.05304 7.15758 7.48953 7.99202 8.06994 8.41987 8.44532 8.95106 9.62805 10.95666 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035980 B = 0.010447 C = 0.008975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.020474 B = 2679.677833 C = 3118.882056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.052 0.948 4 C -0.589 4.589 5 H 0.060 0.940 6 C 0.041 3.959 7 N -0.896 5.896 8 Si 1.032 2.968 9 H -0.285 1.285 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.283 3.717 13 N -0.472 5.472 14 C 0.062 3.938 15 C -0.048 4.048 16 N -0.344 5.344 17 C -0.099 4.099 18 C 0.024 3.976 19 N -0.458 5.458 20 C 0.163 3.837 21 H 0.021 0.979 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.270 0.730 25 H 0.171 0.829 26 H 0.162 0.838 27 H 0.180 0.820 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 0.579 -15.208 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.627 4.627 5 H 0.078 0.922 6 C -0.165 4.165 7 N -0.529 5.529 8 Si 0.859 3.141 9 H -0.211 1.211 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.122 3.878 13 N -0.184 5.184 14 C -0.078 4.078 15 C -0.172 4.172 16 N -0.016 5.016 17 C -0.235 4.235 18 C -0.131 4.131 19 N -0.179 5.179 20 C -0.082 4.082 21 H 0.040 0.960 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.188 0.812 26 H 0.179 0.821 27 H 0.198 0.802 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.192 1.677 -13.064 13.226 hybrid contribution 1.237 -1.640 -2.675 3.373 sum 2.430 0.037 -15.740 15.926 Atomic orbital electron populations 1.22126 0.96818 1.00756 0.99806 1.18256 0.93095 0.95737 0.88538 0.92982 1.21714 1.41099 1.10150 0.89689 0.92168 1.25683 0.93287 1.05755 0.91780 1.70846 1.43925 1.06430 1.31672 0.84213 0.77702 0.76098 0.76061 1.21082 1.20471 1.20049 1.22118 0.85705 0.88058 0.91898 1.68228 1.23697 1.07705 1.18764 1.22320 0.94913 1.00864 0.89658 1.22318 1.06199 0.83835 1.04861 1.42812 1.31495 1.09411 1.17853 1.22598 1.07191 0.91188 1.02562 1.22652 1.00667 0.97744 0.92085 1.70575 1.13184 1.14146 1.19969 1.22232 1.04613 0.90237 0.91111 0.95979 0.92635 0.92193 0.92032 0.81245 0.82068 0.80246 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.88 37.16 0.33 -2.83 15 2 C 0.06 1.61 2.17 -92.92 -0.20 1.41 15 3 H 0.05 1.34 6.33 -51.93 -0.33 1.01 15 4 C -0.59 -16.95 8.64 -34.44 -0.30 -17.24 15 5 H 0.06 1.89 7.98 -52.49 -0.42 1.47 15 6 C 0.04 1.19 5.20 -17.82 -0.09 1.10 15 7 N -0.90 -27.58 13.70 55.43 0.76 -26.83 15 8 Si 1.03 25.47 26.44 -169.99 -4.50 20.97 15 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.27 -6.26 6.15 56.52 0.35 -5.91 15 12 C 0.28 6.51 5.48 -81.87 -0.45 6.06 15 13 N -0.47 -10.10 9.88 -9.36 -0.09 -10.19 15 14 C 0.06 1.00 11.07 -17.97 -0.20 0.80 15 15 C -0.05 -0.70 11.04 -16.54 -0.18 -0.88 15 16 N -0.34 -5.89 2.95 -62.70 -0.19 -6.08 15 17 C -0.10 -1.40 11.79 -16.67 -0.20 -1.59 15 18 C 0.02 0.37 11.83 -17.89 -0.21 0.16 15 19 N -0.46 -9.43 11.04 -12.72 -0.14 -9.57 15 20 C 0.16 3.45 7.54 -155.97 -1.18 2.28 15 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.05 1.27 7.89 -51.93 -0.41 0.86 15 23 H 0.06 1.40 5.47 -51.93 -0.28 1.12 15 24 H 0.27 8.30 8.73 -40.82 -0.36 7.94 15 25 H 0.17 2.04 8.06 -52.49 -0.42 1.61 15 26 H 0.16 1.57 8.06 -52.49 -0.42 1.14 15 27 H 0.18 1.68 8.06 -52.49 -0.42 1.25 15 28 H 0.18 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 244.77 15.07 3.69 3.69 Total: -1.00 -33.61 244.77 -5.90 -39.51 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -2.76 Total: -0.78 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.68 Total: -10.73 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.34 Total: -52.66 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.50 Total: 20.97 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.61 -5.90 -39.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081445.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.420 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds