Wall clock time and date at job start Mon Mar 30 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39436 * 126.64859 * 2 1 4 4 C 1.41270 * 126.14605 * 0.27726 * 3 2 1 5 5 H 1.07997 * 119.99977 * 354.30770 * 4 3 2 6 6 C 1.39721 * 119.99631 * 174.29912 * 4 3 2 7 7 N 1.30965 * 120.00231 * 6.04133 * 6 4 3 8 8 Si 1.86798 * 119.99571 * 186.03921 * 6 4 3 9 9 H 1.48500 * 109.47664 * 94.98637 * 8 6 4 10 10 H 1.48507 * 109.47143 * 214.98552 * 8 6 4 11 11 H 1.48496 * 109.47286 * 334.98163 * 8 6 4 12 12 N 1.34917 * 107.70148 * 180.26233 * 3 2 1 13 13 C 1.31976 * 109.17715 * 359.97438 * 12 3 2 14 14 C 1.41280 * 132.75584 * 179.97438 * 13 12 3 15 15 C 1.35979 * 118.54968 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.72373 * 180.02562 * 15 14 13 17 17 N 1.33663 * 120.54195 * 0.02858 * 15 14 13 18 18 C 1.30401 * 122.00213 * 359.96990 * 17 15 14 19 19 N 1.36085 * 126.65233 * 180.31190 * 2 1 3 20 20 H 1.09001 * 109.47326 * 269.68626 * 1 2 3 21 21 H 1.08997 * 109.47596 * 29.69391 * 1 2 3 22 22 H 1.09010 * 109.46979 * 149.68865 * 1 2 3 23 23 H 0.97005 * 120.00260 * 179.97438 * 7 6 4 24 24 H 1.08000 * 120.72213 * 0.03475 * 14 13 12 25 25 H 1.09008 * 109.47119 * 270.02269 * 16 15 14 26 26 H 1.09000 * 109.47632 * 30.02565 * 16 15 14 27 27 H 1.09000 * 109.47250 * 150.02805 * 16 15 14 28 28 H 1.07997 * 119.46196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3393 1.1187 0.0000 4 6 1.9214 2.4682 0.0055 5 1 0.8723 2.7090 -0.0825 6 6 2.8654 3.4913 0.1250 7 7 4.1439 3.2074 0.1128 8 14 2.3040 5.2640 0.3021 9 1 2.2523 5.6256 1.7415 10 1 3.2600 6.1585 -0.3988 11 1 0.9533 5.4176 -0.2956 12 7 3.6153 0.6807 -0.0059 13 6 3.6206 -0.6391 -0.0090 14 6 4.6618 -1.5940 -0.0156 15 6 4.3334 -2.9136 -0.0178 16 6 5.4228 -3.9547 -0.0243 17 7 3.0522 -3.2947 -0.0143 18 6 2.0746 -2.4318 -0.0081 19 7 2.3193 -1.0918 -0.0059 20 1 -0.3634 -0.0056 1.0276 21 1 -0.3634 0.8927 -0.5090 22 1 -0.3633 -0.8873 -0.5187 23 1 4.7993 3.9177 0.1954 24 1 5.6960 -1.2827 -0.0187 25 1 5.6822 -4.2028 -1.0535 26 1 6.3021 -3.5638 0.4878 27 1 5.0723 -4.8506 0.4881 28 1 1.0541 -2.7853 -0.0051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097323.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:17 Heat of formation + Delta-G solvation = 78.243932 kcal Electronic energy + Delta-G solvation = -13992.647908 eV Core-core repulsion = 11623.321757 eV Total energy + Delta-G solvation = -2369.326152 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42020 -37.46734 -33.84958 -32.94484 -30.98413 -30.28062 -27.83612 -26.75356 -24.40667 -22.51985 -20.78919 -19.92147 -17.48420 -16.13260 -15.82739 -15.04371 -15.01811 -14.43039 -13.79336 -13.26232 -12.99525 -12.39067 -12.15368 -11.96077 -11.70845 -11.46878 -11.39559 -11.16777 -11.10258 -10.64004 -10.22199 -9.85549 -9.37393 -9.33164 -8.34594 -7.85781 -6.63453 -6.59594 -4.41066 1.54271 2.33143 3.02437 3.09075 3.12407 3.70637 3.95804 4.07369 4.60534 4.75910 5.18100 5.45103 5.54460 5.73631 5.92192 5.94061 5.98222 6.06159 6.25993 6.40576 6.49217 6.58171 6.67214 7.05677 7.15023 7.34984 7.58033 7.97843 8.28574 8.65317 8.68868 8.87456 9.59885 10.31306 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045847 B = 0.008708 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.575489 B = 3214.716438 C = 3802.314405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.225 4.225 3 C 0.245 3.755 4 C -0.426 4.426 5 H 0.089 0.911 6 C 0.070 3.930 7 N -0.742 5.742 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.261 1.261 12 N -0.466 5.466 13 C 0.219 3.781 14 C -0.147 4.147 15 C 0.066 3.934 16 C -0.083 4.083 17 N -0.520 5.520 18 C 0.272 3.728 19 N -0.372 5.372 20 H 0.044 0.956 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.276 0.724 24 H 0.137 0.863 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -5.387 0.048 5.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.336 4.336 3 C 0.121 3.879 4 C -0.458 4.458 5 H 0.107 0.893 6 C -0.153 4.153 7 N -0.365 5.365 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.185 1.185 12 N -0.192 5.192 13 C -0.024 4.024 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.141 4.141 17 N -0.238 5.238 18 C -0.006 4.006 19 N -0.053 5.053 20 H 0.063 0.937 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.155 0.845 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.010 -5.607 0.048 5.697 hybrid contribution -0.683 1.131 0.091 1.325 sum -1.693 -4.476 0.139 4.787 Atomic orbital electron populations 1.19601 0.88404 1.00817 1.00017 1.21212 0.93066 0.84744 1.34618 1.18445 0.85763 0.92317 0.91377 1.18808 0.94754 0.87708 1.44575 0.89338 1.25974 0.94572 1.01365 0.93400 1.70089 1.01151 1.34276 1.31002 0.86231 0.79652 0.81292 0.79135 1.19512 1.20186 1.18491 1.71538 1.21727 1.01747 1.24142 1.21591 0.83023 0.92589 1.05200 1.20543 0.98250 0.90508 1.07889 1.20250 0.91328 0.92746 1.01540 1.20427 0.94857 0.96772 1.02037 1.67711 0.99890 1.34900 1.21297 1.24072 0.99315 0.78292 0.98951 1.43728 1.10234 1.06075 1.45271 0.93716 0.91306 0.94373 0.91360 0.84478 0.91502 0.91383 0.91364 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.57 10.13 36.00 0.36 -0.21 15 2 C -0.22 -5.42 7.17 -80.26 -0.58 -6.00 15 3 C 0.25 6.79 6.66 -84.91 -0.57 6.22 15 4 C -0.43 -11.33 9.11 -37.88 -0.35 -11.67 15 5 H 0.09 2.16 7.27 -52.49 -0.38 1.78 15 6 C 0.07 1.80 5.48 -17.37 -0.10 1.70 15 7 N -0.74 -20.29 11.95 55.54 0.66 -19.62 15 8 Si 0.91 18.67 29.56 -169.99 -5.03 13.64 15 9 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 12 N -0.47 -13.36 9.53 -10.23 -0.10 -13.46 15 13 C 0.22 5.59 7.83 -155.74 -1.22 4.37 15 14 C -0.15 -3.16 9.78 -39.24 -0.38 -3.54 15 15 C 0.07 1.26 6.76 -82.61 -0.56 0.70 15 16 C -0.08 -1.18 10.17 36.00 0.37 -0.81 15 17 N -0.52 -10.19 10.28 -10.42 -0.11 -10.30 15 18 C 0.27 5.38 12.11 -89.37 -1.08 4.30 15 19 N -0.37 -8.72 2.93 -58.58 -0.17 -8.89 15 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 1.26 7.52 -51.93 -0.39 0.87 15 22 H 0.04 0.61 8.14 -51.92 -0.42 0.19 15 23 H 0.28 6.82 8.30 -40.82 -0.34 6.49 15 24 H 0.14 2.70 8.06 -52.49 -0.42 2.27 15 25 H 0.07 0.86 8.14 -51.92 -0.42 0.43 15 26 H 0.07 0.84 8.07 -51.93 -0.42 0.42 15 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 28 H 0.18 2.84 8.06 -52.49 -0.42 2.42 15 LS Contribution 250.62 15.07 3.78 3.78 Total: -1.00 -31.15 250.62 -7.92 -39.07 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.86 Total: 0.72 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -4.09 Total: -4.94 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.29 Total: -52.27 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.15 -7.92 -39.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097323.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.313 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds