Wall clock time and date at job start Mon Mar 30 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39436 * 126.64859 * 2 1 4 4 C 1.41270 * 126.14605 * 0.27726 * 3 2 1 5 5 H 1.07997 * 119.99977 * 354.30770 * 4 3 2 6 6 C 1.39721 * 119.99631 * 174.29912 * 4 3 2 7 7 N 1.30965 * 120.00231 * 6.04133 * 6 4 3 8 8 Si 1.86798 * 119.99571 * 186.03921 * 6 4 3 9 9 H 1.48500 * 109.47664 * 94.98637 * 8 6 4 10 10 H 1.48507 * 109.47143 * 214.98552 * 8 6 4 11 11 H 1.48496 * 109.47286 * 334.98163 * 8 6 4 12 12 N 1.34917 * 107.70148 * 180.26233 * 3 2 1 13 13 C 1.31976 * 109.17715 * 359.97438 * 12 3 2 14 14 C 1.41280 * 132.75584 * 179.97438 * 13 12 3 15 15 C 1.35979 * 118.54968 * 180.02562 * 14 13 12 16 16 C 1.50694 * 119.72373 * 180.02562 * 15 14 13 17 17 N 1.33663 * 120.54195 * 0.02858 * 15 14 13 18 18 C 1.30401 * 122.00213 * 359.96990 * 17 15 14 19 19 N 1.36085 * 126.65233 * 180.31190 * 2 1 3 20 20 H 1.09001 * 109.47326 * 269.68626 * 1 2 3 21 21 H 1.08997 * 109.47596 * 29.69391 * 1 2 3 22 22 H 1.09010 * 109.46979 * 149.68865 * 1 2 3 23 23 H 0.97005 * 120.00260 * 179.97438 * 7 6 4 24 24 H 1.08000 * 120.72213 * 0.03475 * 14 13 12 25 25 H 1.09008 * 109.47119 * 270.02269 * 16 15 14 26 26 H 1.09000 * 109.47632 * 30.02565 * 16 15 14 27 27 H 1.09000 * 109.47250 * 150.02805 * 16 15 14 28 28 H 1.07997 * 119.46196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3393 1.1187 0.0000 4 6 1.9214 2.4682 0.0055 5 1 0.8723 2.7090 -0.0825 6 6 2.8654 3.4913 0.1250 7 7 4.1439 3.2074 0.1128 8 14 2.3040 5.2640 0.3021 9 1 2.2523 5.6256 1.7415 10 1 3.2600 6.1585 -0.3988 11 1 0.9533 5.4176 -0.2956 12 7 3.6153 0.6807 -0.0059 13 6 3.6206 -0.6391 -0.0090 14 6 4.6618 -1.5940 -0.0156 15 6 4.3334 -2.9136 -0.0178 16 6 5.4228 -3.9547 -0.0243 17 7 3.0522 -3.2947 -0.0143 18 6 2.0746 -2.4318 -0.0081 19 7 2.3193 -1.0918 -0.0059 20 1 -0.3634 -0.0056 1.0276 21 1 -0.3634 0.8927 -0.5090 22 1 -0.3633 -0.8873 -0.5187 23 1 4.7993 3.9177 0.1954 24 1 5.6960 -1.2827 -0.0187 25 1 5.6822 -4.2028 -1.0535 26 1 6.3021 -3.5638 0.4878 27 1 5.0723 -4.8506 0.4881 28 1 1.0541 -2.7853 -0.0051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097323.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:17 Heat of formation + Delta-G solvation = 60.262509 kcal Electronic energy + Delta-G solvation = -13993.427641 eV Core-core repulsion = 11623.321757 eV Total energy + Delta-G solvation = -2370.105884 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.18775 -39.15472 -35.63684 -34.69655 -32.63151 -31.98260 -29.28289 -28.60250 -26.00573 -24.26181 -22.49180 -21.71618 -19.29394 -17.89518 -17.52591 -16.79181 -16.66952 -16.06904 -15.44780 -14.71234 -14.62895 -14.01520 -13.54335 -13.31052 -13.14586 -13.05388 -13.01598 -12.80533 -12.71393 -12.42836 -11.89345 -11.50597 -11.18293 -11.00211 -10.23966 -9.72611 -8.44251 -8.40965 -6.34623 -0.09821 0.59268 1.41090 1.42002 1.56763 2.00609 2.25669 2.28689 2.85033 3.27651 3.52312 3.62365 3.96726 4.13630 4.47222 4.55481 4.64562 4.75164 4.84884 4.95461 5.05434 5.09681 5.19123 5.26585 5.50477 5.56665 5.81892 6.15158 6.47013 6.82732 6.91248 7.05891 7.72859 8.50353 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045847 B = 0.008708 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.575489 B = 3214.716438 C = 3802.314405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.230 4.230 3 C 0.199 3.801 4 C -0.464 4.464 5 H 0.099 0.901 6 C 0.022 3.978 7 N -0.797 5.797 8 Si 0.993 3.007 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.248 1.248 12 N -0.518 5.518 13 C 0.189 3.811 14 C -0.171 4.171 15 C 0.083 3.917 16 C -0.081 4.081 17 N -0.517 5.517 18 C 0.286 3.714 19 N -0.383 5.383 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.278 0.722 24 H 0.146 0.854 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -7.187 0.081 7.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.341 4.341 3 C 0.074 3.926 4 C -0.497 4.497 5 H 0.117 0.883 6 C -0.196 4.196 7 N -0.422 5.422 8 Si 0.813 3.187 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.171 1.171 12 N -0.244 5.244 13 C -0.055 4.055 14 C -0.195 4.195 15 C -0.041 4.041 16 C -0.139 4.139 17 N -0.235 5.235 18 C 0.007 3.993 19 N -0.064 5.064 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.164 0.836 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.151 -7.451 0.078 7.756 hybrid contribution -0.299 1.307 0.070 1.342 sum -2.450 -6.144 0.148 6.616 Atomic orbital electron populations 1.19698 0.84865 1.02384 1.01365 1.21819 0.95054 0.84036 1.33148 1.19028 0.86461 0.94012 0.93081 1.19180 0.95557 0.88311 1.46648 0.88305 1.26984 0.94303 1.06059 0.92258 1.70231 1.02615 1.35758 1.33565 0.85033 0.79527 0.74979 0.79123 1.19057 1.19806 1.17106 1.71396 1.23175 1.03843 1.25976 1.22082 0.84981 0.92568 1.05893 1.20839 0.98110 0.91051 1.09544 1.21041 0.92427 0.92931 0.97734 1.20592 0.93706 0.95721 1.03839 1.67924 1.00163 1.34494 1.20872 1.25148 1.01440 0.76922 0.95785 1.43875 1.09398 1.07204 1.45881 0.92304 0.91287 0.91162 0.91250 0.83633 0.89469 0.89524 0.89742 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.91 10.13 71.23 0.72 -0.18 15 2 C -0.23 -11.08 7.17 42.19 0.30 -10.77 15 3 C 0.20 11.42 6.66 39.70 0.26 11.68 15 4 C -0.46 -25.68 9.11 23.37 0.21 -25.46 15 5 H 0.10 4.96 7.27 -2.91 -0.02 4.94 15 6 C 0.02 1.15 5.48 85.18 0.47 1.61 15 7 N -0.80 -46.01 11.95 21.79 0.26 -45.75 15 8 Si 0.99 39.44 29.56 68.60 2.03 41.47 15 9 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 10 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 11 H -0.25 -9.16 7.11 99.48 0.71 -8.45 15 12 N -0.52 -31.10 9.53 -186.29 -1.77 -32.88 15 13 C 0.19 9.82 7.83 134.14 1.05 10.87 15 14 C -0.17 -7.32 9.78 22.49 0.22 -7.10 15 15 C 0.08 2.97 6.76 41.75 0.28 3.25 15 16 C -0.08 -1.99 10.17 71.23 0.72 -1.26 15 17 N -0.52 -18.58 10.28 -186.89 -1.92 -20.50 15 18 C 0.29 10.44 12.11 179.91 2.18 12.62 15 19 N -0.38 -17.64 2.93 -339.25 -1.00 -18.64 15 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.07 2.45 7.52 -2.39 -0.02 2.43 15 22 H 0.07 2.02 8.14 -2.38 -0.02 2.01 15 23 H 0.28 14.56 8.30 -92.70 -0.77 13.79 15 24 H 0.15 5.79 8.06 -2.91 -0.02 5.76 15 25 H 0.09 1.87 8.14 -2.38 -0.02 1.85 15 26 H 0.09 1.84 8.07 -2.39 -0.02 1.82 15 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 28 H 0.23 5.99 8.06 -2.91 -0.02 5.96 15 Total: -1.00 -71.71 250.62 5.19 -66.52 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.17 Total: 14.53 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 6.42 Total: -4.75 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.43 Total: -117.77 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -71.71 5.19 -66.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097323.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.785 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds