Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30810 * 126.24556 * 2 1 4 4 N 1.28684 * 110.28940 * 179.97438 * 3 2 1 5 5 C 1.32303 * 109.48335 * 0.02562 * 4 3 2 6 6 C 1.40823 * 133.46587 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.38716 * 359.94948 * 6 5 4 8 8 C 1.50702 * 109.47308 * 84.99997 * 7 6 5 9 9 H 1.08006 * 119.99723 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00534 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99662 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00660 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46842 * 59.99873 * 12 10 8 14 14 H 1.48490 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46821 * 300.00412 * 12 10 8 16 16 C 1.36019 * 119.22601 * 179.97438 * 6 5 4 17 17 C 1.40548 * 119.74773 * 359.97438 * 16 6 5 18 18 C 1.34953 * 120.36571 * 0.03135 * 17 16 6 19 19 N 1.36061 * 126.25100 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47322 * 90.02491 * 1 2 3 21 21 H 1.09004 * 109.46811 * 210.02605 * 1 2 3 22 22 H 1.09001 * 109.47419 * 330.02505 * 1 2 3 23 23 H 1.08999 * 109.47133 * 204.99809 * 7 6 5 24 24 H 1.08997 * 109.47418 * 325.00066 * 7 6 5 25 25 H 0.97003 * 119.99802 * 180.02562 * 11 10 8 26 26 H 1.07998 * 120.12802 * 180.02562 * 16 6 5 27 27 H 1.08003 * 119.81734 * 179.97438 * 17 16 6 28 28 H 1.08002 * 119.74270 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0550 0.0000 4 7 3.5176 0.7012 0.0005 5 6 3.5990 -0.6193 0.0004 6 6 4.6788 -1.5233 0.0012 7 6 6.0977 -1.0160 0.0015 8 6 6.5286 -0.7296 1.4169 9 1 5.8432 -0.8977 2.2345 10 6 7.7976 -0.2529 1.6682 11 7 8.6321 -0.0477 0.6726 12 14 8.3315 0.1028 3.4226 13 1 8.2504 -1.1429 4.2269 14 1 9.7298 0.6026 3.4229 15 1 7.4383 1.1320 4.0127 16 6 4.4259 -2.8598 0.0012 17 6 3.0973 -3.3182 0.0010 18 6 2.0726 -2.4400 0.0001 19 7 2.3115 -1.0972 0.0005 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3634 0.8902 0.5134 23 1 6.7536 -1.7709 -0.4322 24 1 6.1567 -0.1013 -0.5884 25 1 9.5251 0.2873 0.8494 26 1 5.2430 -3.5661 0.0023 27 1 2.8952 -4.3792 0.0006 28 1 1.0556 -2.8033 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260106869.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = 95.897758 kcal Electronic energy + Delta-G solvation = -13920.658087 eV Core-core repulsion = 11552.097463 eV Total energy + Delta-G solvation = -2368.560624 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.01602 -37.79856 -34.69764 -32.75539 -31.41730 -30.87299 -27.44039 -26.94726 -23.96850 -22.87090 -22.31686 -20.06200 -17.40076 -16.76994 -16.47282 -15.99489 -15.27198 -14.62158 -13.83855 -13.61650 -13.18201 -12.67050 -12.35795 -12.13685 -12.02293 -11.64177 -11.22546 -11.16460 -10.71499 -10.57331 -10.39105 -10.01233 -9.67137 -9.37958 -8.98120 -8.40172 -7.39042 -6.02780 -4.06515 1.17391 1.56667 2.73054 3.14508 3.34855 3.38993 3.42873 3.92197 4.44238 4.47668 4.66249 4.93115 5.02021 5.19025 5.32542 5.37015 5.41465 5.63111 5.76723 5.96256 6.18202 6.49489 6.50745 6.71128 6.94689 7.30385 7.47768 7.66035 7.90181 8.25593 8.94445 9.08260 9.56369 11.07310 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036745 B = 0.008585 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.821043 B = 3260.682543 C = 3610.179447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.112 3.888 3 N -0.260 5.260 4 N -0.267 5.267 5 C 0.204 3.796 6 C 0.021 3.979 7 C 0.056 3.944 8 C -0.508 4.508 9 H 0.054 0.946 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.141 4.141 17 C -0.109 4.109 18 C 0.011 3.989 19 N -0.386 5.386 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.264 0.736 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -7.336 -1.791 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.150 4.150 3 N -0.102 5.102 4 N -0.113 5.113 5 C -0.044 4.044 6 C 0.018 3.982 7 C 0.019 3.981 8 C -0.546 4.546 9 H 0.072 0.928 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.165 4.165 17 C -0.131 4.131 18 C -0.110 4.110 19 N -0.066 5.066 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.544 -5.648 -1.833 14.789 hybrid contribution -0.081 -1.190 1.009 1.563 sum -13.625 -6.838 -0.824 15.267 Atomic orbital electron populations 1.20047 0.83868 1.03979 1.03352 1.24664 0.96565 0.81670 1.12085 1.74211 0.97166 1.23809 1.15040 1.75059 1.09471 1.06569 1.20195 1.22359 0.84242 0.92571 1.05269 1.20078 0.96264 0.90624 0.91261 1.18353 0.83329 0.97763 0.98664 1.20819 0.98143 1.44625 0.91062 0.92815 1.24936 0.96465 0.95170 0.97339 1.69936 1.06957 1.45238 1.30887 0.86563 0.77615 0.78767 0.84568 1.20219 1.21112 1.20088 1.21002 0.96333 0.95251 1.03890 1.20899 0.92257 0.99641 1.00264 1.21257 1.01013 0.80087 1.08684 1.43657 1.08857 1.06852 1.47198 0.90255 0.90993 0.88965 0.94285 0.93818 0.92675 0.83939 0.83600 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.41 36.00 0.37 -0.20 15 2 C 0.11 1.93 8.14 -154.22 -1.25 0.68 15 3 N -0.26 -5.61 12.19 32.94 0.40 -5.21 15 4 N -0.27 -6.59 12.31 31.14 0.38 -6.20 15 5 C 0.20 4.58 7.64 -156.06 -1.19 3.38 15 6 C 0.02 0.47 5.09 -104.44 -0.53 -0.06 15 7 C 0.06 1.46 5.13 -29.04 -0.15 1.32 15 8 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 15 9 H 0.05 1.54 7.74 -52.48 -0.41 1.13 15 10 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 11 N -0.89 -26.58 13.29 55.43 0.74 -25.84 15 12 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 15 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 16 C -0.14 -2.44 9.70 -39.51 -0.38 -2.82 15 17 C -0.11 -1.45 9.98 -39.88 -0.40 -1.85 15 18 C 0.01 0.15 10.91 -16.69 -0.18 -0.03 15 19 N -0.39 -6.94 2.95 -59.73 -0.18 -7.11 15 20 H 0.08 0.71 8.14 -51.93 -0.42 0.28 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.04 1.01 8.05 -51.93 -0.42 0.59 15 24 H 0.04 1.25 8.13 -51.93 -0.42 0.83 15 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 26 H 0.14 2.24 8.06 -52.49 -0.42 1.82 15 27 H 0.15 1.30 8.06 -52.48 -0.42 0.88 15 28 H 0.16 1.41 8.06 -52.49 -0.42 0.98 15 LS Contribution 253.97 15.07 3.83 3.83 Total: -1.00 -34.13 253.97 -6.89 -41.02 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: -2.92 Total: -4.83 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -4.13 Total: -12.69 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 1.34 Total: -44.37 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.13 -6.89 -41.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260106869.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.920 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds