Wall clock time and date at job start Mon Mar 30 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47080 * 240.00017 * 2 1 3 5 5 H 1.08001 * 119.99899 * 245.46278 * 4 2 1 6 6 C 1.37874 * 120.00407 * 65.46028 * 4 2 1 7 7 N 1.31514 * 119.99242 * 9.59949 * 6 4 2 8 8 Si 1.86789 * 120.00283 * 189.59586 * 6 4 2 9 9 H 1.48502 * 109.47222 * 84.99580 * 8 6 4 10 10 H 1.48503 * 109.47313 * 204.99717 * 8 6 4 11 11 H 1.48498 * 109.47357 * 324.99635 * 8 6 4 12 12 C 1.50698 * 109.47422 * 119.99855 * 2 1 3 13 13 C 1.38451 * 120.89846 * 59.99725 * 12 2 1 14 14 C 1.38580 * 119.46604 * 179.72285 * 13 12 2 15 15 N 1.31545 * 121.41861 * 0.27683 * 14 13 12 16 16 C 1.33079 * 121.53141 * 0.02562 * 15 14 13 17 17 N 1.35675 * 133.33686 * 179.97438 * 16 15 14 18 18 C 1.30207 * 109.75096 * 180.02562 * 17 16 15 19 19 N 1.35893 * 110.11917 * 0.02562 * 18 17 16 20 20 H 0.96996 * 126.39241 * 179.97438 * 19 18 17 21 21 C 1.37990 * 107.22537 * 359.97438 * 19 18 17 22 22 H 1.08995 * 109.47255 * 63.29022 * 1 2 3 23 23 H 1.09000 * 109.47530 * 183.29341 * 1 2 3 24 24 H 1.09003 * 109.47308 * 303.29156 * 1 2 3 25 25 H 0.97008 * 119.99588 * 179.97438 * 7 6 4 26 26 H 1.07996 * 120.27112 * 359.97438 * 13 12 2 27 27 H 1.07997 * 119.29153 * 180.25661 * 14 13 12 28 28 H 1.08002 * 124.94417 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7945 -0.1775 -2.4797 7 7 1.3000 1.0358 -2.5935 8 14 2.1749 -1.1785 -4.0101 9 1 1.0223 -2.0608 -4.3236 10 1 2.4220 -0.2622 -5.1523 11 1 3.3829 -2.0085 -3.7711 12 6 2.0323 -0.7104 1.2304 13 6 1.7093 -2.0355 1.4681 14 6 2.1922 -2.6614 2.6063 15 7 2.9487 -2.0218 3.4719 16 6 3.2837 -0.7462 3.2943 17 7 4.0310 0.1289 4.0128 18 6 4.0602 1.2821 3.4089 19 7 3.3336 1.2275 2.2618 20 1 3.1971 1.9524 1.6320 21 6 2.8260 -0.0516 2.1601 22 1 -0.3633 0.4619 -0.9180 23 1 -0.3634 -1.0259 0.0590 24 1 -0.3634 0.5641 0.8590 25 1 1.1331 1.4110 -3.4724 26 1 1.0893 -2.5783 0.7700 27 1 1.9419 -3.6963 2.7867 28 1 4.5854 2.1551 3.7674 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260121562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:58 Heat of formation + Delta-G solvation = 52.491016 kcal Electronic energy + Delta-G solvation = -14086.409401 eV Core-core repulsion = 11715.966519 eV Total energy + Delta-G solvation = -2370.442882 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.15633 -39.29836 -36.84353 -34.30502 -32.86584 -30.66492 -30.48580 -27.23027 -25.18193 -23.95959 -23.21938 -21.20919 -19.10646 -18.51691 -18.15531 -17.00873 -16.45440 -16.28239 -15.78637 -14.79493 -14.65399 -14.32894 -13.78443 -13.56446 -13.46156 -13.06577 -12.79278 -12.42990 -12.26328 -11.82627 -11.70544 -11.61532 -11.08757 -10.51637 -10.03998 -9.49923 -9.41286 -8.20225 -6.28940 0.03724 0.44324 1.41060 1.43678 1.51291 1.85174 2.04814 2.40861 2.97279 3.04763 3.12703 3.69711 4.08978 4.13461 4.30213 4.38270 4.69662 4.78963 4.90590 4.96006 5.09451 5.31356 5.32135 5.57104 5.76130 5.82756 5.86346 6.22309 6.45308 6.70530 6.77668 7.20642 7.38363 8.87511 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.009183 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.596010 B = 3048.303373 C = 3320.356603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.078 3.922 3 H 0.015 0.985 4 C -0.526 4.526 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.004 3.996 13 C -0.174 4.174 14 C 0.123 3.877 15 N -0.497 5.497 16 C 0.216 3.784 17 N -0.537 5.537 18 C 0.301 3.699 19 N -0.587 5.587 20 H 0.436 0.564 21 C -0.027 4.027 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.151 0.849 27 H 0.197 0.803 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 0.491 6.115 6.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.059 3.941 3 H 0.033 0.967 4 C -0.564 4.564 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.552 5.552 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.007 4.007 13 C -0.196 4.196 14 C -0.045 4.045 15 N -0.209 5.209 16 C -0.025 4.025 17 N -0.260 5.260 18 C 0.012 3.988 19 N -0.199 5.199 20 H 0.278 0.722 21 C -0.140 4.140 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.169 0.831 27 H 0.213 0.787 28 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 2.054 0.000 7.550 7.825 hybrid contribution -0.608 0.721 -2.804 2.958 sum 1.447 0.721 4.746 5.014 Atomic orbital electron populations 1.21605 0.96728 0.99900 0.99288 1.17685 0.93326 0.94326 0.88778 0.96673 1.21284 1.36114 1.08146 0.90875 0.92862 1.25609 0.94962 0.95438 1.01588 1.70040 1.45500 1.15014 1.24625 0.85694 0.78791 0.78814 0.79156 1.19568 1.21113 1.19826 1.20093 0.92412 0.94565 0.93634 1.21985 1.03743 0.94097 0.99800 1.23134 0.91803 1.00651 0.88906 1.66789 1.15349 1.06752 1.32040 1.19894 0.99112 0.91848 0.91640 1.70216 1.23251 1.01109 1.31465 1.26581 0.92027 0.98197 0.81970 1.43111 1.42906 1.10656 1.23233 0.72220 1.19843 1.04669 0.88697 1.00808 0.93493 0.93407 0.95482 0.92717 0.83146 0.78658 0.70566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.94 71.98 0.64 -4.53 15 2 C 0.08 3.62 2.37 -12.29 -0.03 3.59 15 3 H 0.02 0.75 7.46 -2.39 -0.02 0.74 15 4 C -0.53 -27.06 8.22 25.60 0.21 -26.85 15 5 H 0.05 2.76 7.57 -2.91 -0.02 2.74 15 6 C 0.02 1.24 5.17 84.65 0.44 1.68 15 7 N -0.91 -49.34 12.16 21.45 0.26 -49.08 15 8 Si 0.95 41.37 29.55 68.60 2.03 43.40 15 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 15 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 12 C 0.00 0.15 4.76 -19.67 -0.09 0.06 15 13 C -0.17 -6.51 8.78 22.40 0.20 -6.32 15 14 C 0.12 4.23 11.15 84.82 0.95 5.17 15 15 N -0.50 -20.03 10.41 -193.98 -2.02 -22.05 15 16 C 0.22 8.85 8.38 134.33 1.13 9.98 15 17 N -0.54 -19.41 11.27 -196.98 -2.22 -21.62 15 18 C 0.30 7.78 12.97 180.07 2.33 10.11 15 19 N -0.59 -18.06 6.15 -191.08 -1.17 -19.23 15 20 H 0.44 11.62 8.56 -92.71 -0.79 10.82 15 21 C -0.03 -1.09 6.99 38.91 0.27 -0.82 15 22 H 0.05 2.27 6.84 -2.39 -0.02 2.26 15 23 H 0.05 1.95 7.37 -2.39 -0.02 1.93 15 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 25 H 0.26 13.62 8.31 -92.70 -0.77 12.85 15 26 H 0.15 5.19 7.64 -2.91 -0.02 5.17 15 27 H 0.20 4.84 8.06 -2.91 -0.02 4.82 15 28 H 0.28 3.16 8.06 -2.91 -0.02 3.14 15 Total: -1.00 -67.72 246.58 3.31 -64.41 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.39 Total: 12.11 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 6.04 Total: -7.92 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -5.15 Total: -111.99 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -67.72 3.31 -64.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.899 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds