Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99677 * 2 1 4 4 H 1.48506 * 109.46801 * 270.00462 * 3 2 1 5 5 H 1.48501 * 109.47448 * 29.99883 * 3 2 1 6 6 H 1.48498 * 109.47265 * 150.00681 * 3 2 1 7 7 C 1.37871 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.38237 * 120.00239 * 89.99962 * 10 9 7 12 12 C 1.38237 * 120.00122 * 179.97438 * 11 10 9 13 13 C 1.38227 * 120.00086 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00170 * 180.02562 * 13 12 11 15 15 N 1.46905 * 115.54825 * 355.58466 * 14 13 12 16 16 C 1.53004 * 117.49973 * 141.25035 * 14 13 12 17 17 C 1.53001 * 117.50075 * 209.91448 * 14 13 12 18 18 C 1.38241 * 120.00008 * 0.27604 * 13 12 11 19 19 C 1.38234 * 119.99763 * 359.53635 * 18 13 12 20 20 H 0.96999 * 120.00523 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47526 * 59.99485 * 9 7 2 22 22 H 1.09005 * 109.46938 * 299.99699 * 9 7 2 23 23 H 1.08003 * 119.99772 * 359.97438 * 11 10 9 24 24 H 1.08003 * 119.99363 * 179.97438 * 12 11 10 25 25 H 1.00901 * 110.99869 * 34.41792 * 15 14 13 26 26 H 1.00896 * 110.99543 * 158.36915 * 15 14 13 27 27 H 1.08997 * 117.50138 * 215.00364 * 16 14 13 28 28 H 1.09002 * 117.49525 * 0.03148 * 16 14 13 29 29 H 1.08998 * 117.49603 * 359.97438 * 17 14 13 30 30 H 1.08999 * 117.50116 * 144.97945 * 17 14 13 31 31 H 1.08000 * 120.00169 * 179.72662 * 18 13 12 32 32 H 1.08003 * 119.99961 * 180.22914 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6797 -4.1698 1.1977 12 6 3.5777 -5.2208 1.1976 13 6 4.0260 -5.7468 0.0006 14 6 5.0045 -6.8929 0.0005 15 7 5.4939 -7.3082 1.3219 16 6 4.8168 -7.9821 -1.0576 17 6 5.9775 -6.9911 -1.1761 18 6 3.5808 -5.2181 -1.1966 19 6 2.6799 -4.1697 -1.1966 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.3291 -3.7591 2.1330 24 1 3.9289 -5.6309 2.1330 25 1 4.7752 -7.2050 2.0225 26 1 5.8418 -8.2550 1.2975 27 1 5.0565 -9.0067 -0.7733 28 1 3.9858 -7.8693 -1.7539 29 1 5.9096 -6.2270 -1.9504 30 1 6.9809 -7.3635 -0.9698 31 1 3.9345 -5.6261 -2.1319 32 1 2.3292 -3.7590 -2.1319 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = 19.196429 kcal Electronic energy + Delta-G solvation = -13749.487188 eV Core-core repulsion = 11481.140888 eV Total energy + Delta-G solvation = -2268.346300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77563 -38.39120 -35.33113 -32.84385 -32.55158 -31.11593 -28.94237 -25.52075 -23.37274 -23.25953 -22.71423 -20.50470 -18.55516 -18.14791 -16.68263 -16.62530 -15.74349 -15.53970 -15.29724 -14.86328 -14.56592 -13.98350 -13.93927 -13.46573 -13.28413 -13.09509 -12.61613 -12.50477 -12.39066 -12.23474 -11.80588 -11.52993 -11.49537 -11.17911 -10.62303 -9.74930 -9.68850 -8.97180 -8.21498 -6.35688 0.51529 0.57818 1.38712 1.39676 1.51517 2.38067 2.75406 3.08586 3.25066 3.34909 3.66214 3.83890 4.09952 4.20222 4.21669 4.36158 4.60501 4.75489 4.76609 4.83613 5.01115 5.10912 5.17523 5.24289 5.33300 5.38505 5.60924 5.62560 5.73768 6.07067 6.09756 6.19697 6.24228 6.56362 6.76839 7.33129 8.87342 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.051191 B = 0.005957 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.839602 B = 4699.193181 C = 4721.947644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.056 3.944 10 C -0.067 4.067 11 C -0.133 4.133 12 C -0.109 4.109 13 C -0.073 4.073 14 C 0.087 3.913 15 N -0.811 5.811 16 C -0.195 4.195 17 C -0.164 4.164 18 C -0.112 4.112 19 C -0.133 4.133 20 H 0.266 0.734 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.114 0.886 24 H 0.142 0.858 25 H 0.351 0.649 26 H 0.356 0.644 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 -15.116 -0.467 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.019 3.981 10 C -0.067 4.067 11 C -0.152 4.152 12 C -0.127 4.127 13 C -0.074 4.074 14 C -0.007 4.007 15 N -0.343 5.343 16 C -0.234 4.234 17 C -0.202 4.202 18 C -0.130 4.130 19 C -0.151 4.151 20 H 0.075 0.925 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.132 0.868 24 H 0.159 0.841 25 H 0.167 0.833 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.158 0.842 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.313 -14.426 -0.496 17.740 hybrid contribution -0.871 0.523 -0.064 1.019 sum 9.441 -13.902 -0.560 16.814 Atomic orbital electron populations 1.70074 1.07659 1.28016 1.51242 1.25922 0.95775 1.03100 0.94483 0.85437 0.78568 0.78373 0.78640 1.19578 1.20282 1.19150 1.21368 0.93001 0.91314 1.51106 0.92960 1.18105 0.92925 0.91244 0.95817 1.20423 0.97158 0.95147 0.93970 1.21100 0.99085 0.97493 0.97473 1.21002 0.96911 0.96336 0.98488 1.19033 0.97852 0.97241 0.93235 1.19829 0.98001 0.95511 0.87360 1.58524 1.41008 1.30724 1.03997 1.23803 1.00934 0.95820 1.02845 1.23307 0.95734 1.02250 0.98876 1.20992 0.97373 0.96355 0.98245 1.21074 0.99080 0.97454 0.97467 0.92494 0.97848 0.97845 0.86761 0.84051 0.83338 0.82883 0.86732 0.88627 0.88540 0.87310 0.84230 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.44 0.28 -56.42 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.06 3.08 5.10 29.10 0.15 3.23 16 10 C -0.07 -3.05 5.07 -19.87 -0.10 -3.15 16 11 C -0.13 -5.37 9.70 22.27 0.22 -5.15 16 12 C -0.11 -3.58 9.33 22.27 0.21 -3.37 16 13 C -0.07 -2.22 5.67 -19.87 -0.11 -2.33 16 14 C 0.09 2.01 3.26 2.78 0.01 2.02 16 15 N -0.81 -15.93 9.58 -154.51 -1.48 -17.41 16 16 C -0.19 -3.55 9.57 30.62 0.29 -3.26 16 17 C -0.16 -3.29 9.75 30.62 0.30 -2.99 16 18 C -0.11 -3.61 8.75 22.27 0.19 -3.41 16 19 C -0.13 -5.30 9.70 22.27 0.22 -5.09 16 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 21 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 22 H 0.00 0.19 8.09 -2.38 -0.02 0.17 16 23 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 24 H 0.14 3.76 6.25 -2.91 -0.02 3.74 16 25 H 0.35 6.48 6.91 -89.69 -0.62 5.86 16 26 H 0.36 5.11 8.78 -89.70 -0.79 4.32 16 27 H 0.11 1.59 8.09 -2.39 -0.02 1.57 16 28 H 0.10 1.82 7.60 -2.39 -0.02 1.80 16 29 H 0.10 2.01 7.05 -2.39 -0.02 2.00 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.14 3.66 6.50 -2.91 -0.02 3.64 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -65.97 271.85 2.62 -63.35 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.28 Total: 17.04 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 2.07 Total: -53.52 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.20 Total: -73.84 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.97 2.62 -63.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.548 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds