Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35004 * 125.68622 * 2 1 4 4 N 1.36841 * 107.09880 * 180.02562 * 3 2 1 5 5 C 1.36449 * 132.73654 * 179.97438 * 4 3 2 6 6 C 1.35583 * 119.07519 * 179.72151 * 5 4 3 7 7 C 1.50697 * 120.33370 * 180.30229 * 6 5 4 8 8 C 1.50699 * 109.47308 * 90.00225 * 7 6 5 9 9 H 1.08000 * 120.00062 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00173 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99758 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46874 * 60.00176 * 12 10 8 14 14 H 1.48500 * 109.47220 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46843 * 300.00267 * 12 10 8 16 16 C 1.40200 * 119.32608 * 0.27782 * 6 5 4 17 17 N 1.31230 * 120.37796 * 359.97438 * 16 6 5 18 18 C 1.34085 * 120.92020 * 0.02562 * 17 16 6 19 19 N 1.32520 * 131.94076 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.47268 * 90.00335 * 1 2 3 21 21 H 1.09006 * 109.46983 * 210.00027 * 1 2 3 22 22 H 1.09000 * 109.47384 * 329.99958 * 1 2 3 23 23 H 1.07996 * 126.45171 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.46503 * 0.02562 * 5 4 3 25 25 H 1.09006 * 109.46755 * 209.99531 * 7 6 5 26 26 H 1.08996 * 109.47542 * 329.99256 * 7 6 5 27 27 H 0.97007 * 120.00170 * 180.02562 * 11 10 8 28 28 H 1.07999 * 119.80917 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2945 1.0965 0.0000 4 7 3.5915 0.6604 -0.0006 5 6 4.7887 1.3151 -0.0013 6 6 5.9353 0.5917 0.0040 7 6 7.2730 1.2856 0.0102 8 6 7.7124 1.5168 1.4331 9 1 7.0855 1.1940 2.2511 10 6 8.9147 2.1405 1.6906 11 7 9.6784 2.5332 0.6945 12 14 9.4590 2.4278 3.4543 13 1 9.5739 1.1238 4.1555 14 1 10.7773 3.1115 3.4604 15 1 8.4583 3.2770 4.1491 16 6 5.8639 -0.8085 0.0041 17 7 4.6994 -1.4136 -0.0003 18 6 3.5576 -0.7105 -0.0056 19 7 2.2866 -1.0855 -0.0102 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9632 2.1244 0.0004 24 1 4.8224 2.3946 -0.0011 25 1 8.0077 0.6628 -0.5002 26 1 7.1882 2.2428 -0.5040 27 1 10.5245 2.9717 0.8756 28 1 6.7724 -1.3925 0.0088 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = 89.106288 kcal Electronic energy + Delta-G solvation = -13615.439001 eV Core-core repulsion = 11246.583877 eV Total energy + Delta-G solvation = -2368.855124 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.57068 -38.13122 -34.25888 -33.71618 -31.90242 -30.30796 -27.78402 -26.65422 -23.66033 -23.57803 -21.52892 -20.26374 -17.75639 -16.96334 -16.58516 -15.85661 -15.41012 -14.66804 -13.89018 -13.41674 -13.30704 -12.93515 -12.57975 -12.44427 -12.14598 -11.74759 -11.58854 -11.16666 -10.86444 -10.80287 -10.23280 -9.96576 -9.68206 -9.30030 -8.61794 -8.24426 -7.72855 -6.24802 -4.31256 1.03385 1.55051 2.85911 3.03730 3.20890 3.26176 3.29308 3.94005 4.04076 4.29482 4.75984 4.94544 5.08617 5.12475 5.34882 5.43742 5.62687 5.66890 5.80316 5.98529 6.19344 6.27620 6.61320 6.85905 7.05159 7.22797 7.32728 7.68940 7.94472 8.02259 8.33168 8.72829 9.34969 10.84448 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051945 B = 0.006543 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.902757 B = 4278.637076 C = 4418.826997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.059 3.941 3 C -0.110 4.110 4 N -0.386 5.386 5 C 0.075 3.925 6 C -0.114 4.114 7 C 0.063 3.937 8 C -0.525 4.525 9 H 0.057 0.943 10 C 0.064 3.936 11 N -0.889 5.889 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.187 3.813 17 N -0.455 5.455 18 C 0.374 3.626 19 N -0.488 5.488 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.178 0.822 24 H 0.171 0.829 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -0.196 -1.804 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.243 4.243 4 N -0.061 5.061 5 C -0.056 4.056 6 C -0.119 4.119 7 C 0.025 3.975 8 C -0.563 4.563 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.725 3.275 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.000 4.000 17 N -0.167 5.167 18 C 0.025 3.975 19 N -0.212 5.212 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.196 0.804 24 H 0.188 0.812 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.021 -1.798 -1.857 11.320 hybrid contribution 0.854 2.035 1.014 2.429 sum -10.167 0.238 -0.843 10.205 Atomic orbital electron populations 1.20085 0.86943 1.02939 1.02494 1.20842 0.96649 0.87897 1.02138 1.22231 0.81017 1.00836 1.20186 1.43900 1.06514 1.10688 1.44977 1.22071 0.81799 0.99676 1.02038 1.21333 0.98047 0.94646 0.97867 1.18246 0.85205 0.95629 0.98389 1.20966 1.04654 1.39739 0.90979 0.92447 1.24978 0.96267 0.95093 0.97534 1.69924 1.12291 1.39416 1.31041 0.86553 0.77908 0.78673 0.84358 1.19950 1.21047 1.20151 1.23476 0.94546 0.92543 0.89389 1.67913 0.95777 1.36445 1.16556 1.21915 0.93403 0.77070 1.05116 1.70512 0.96797 1.28664 1.25224 0.90976 0.90840 0.90945 0.80442 0.81197 0.93886 0.94579 0.92432 0.80107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.42 36.00 0.37 -0.36 15 2 C 0.06 0.96 7.06 -82.95 -0.59 0.37 15 3 C -0.11 -1.71 11.67 -16.46 -0.19 -1.90 15 4 N -0.39 -7.11 2.95 -64.40 -0.19 -7.30 15 5 C 0.08 1.35 10.72 -16.45 -0.18 1.17 15 6 C -0.11 -2.21 5.05 -104.84 -0.53 -2.74 15 7 C 0.06 1.41 5.12 -29.04 -0.15 1.27 15 8 C -0.53 -13.28 9.09 -34.44 -0.31 -13.59 15 9 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 11 N -0.89 -24.19 13.29 55.43 0.74 -23.45 15 12 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 15 13 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 16 C 0.19 3.48 10.96 -17.07 -0.19 3.29 15 17 N -0.46 -9.26 10.48 -13.70 -0.14 -9.41 15 18 C 0.37 7.69 8.92 -322.52 -2.88 4.82 15 19 N -0.49 -9.75 11.31 -10.66 -0.12 -9.87 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.18 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.17 2.66 8.06 -52.49 -0.42 2.24 15 25 H 0.04 0.99 8.10 -51.93 -0.42 0.57 15 26 H 0.04 0.83 8.08 -51.93 -0.42 0.41 15 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 28 H 0.18 2.88 8.06 -52.49 -0.42 2.46 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -30.27 254.18 -8.56 -38.83 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.92 Total: -1.72 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.73 Total: -6.10 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.28 Total: -50.02 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.27 -8.56 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.938 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds