Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47380 * 2 1 4 4 C 1.37922 * 126.46594 * 270.07940 * 3 2 1 5 5 C 1.40140 * 125.31016 * 0.08861 * 4 3 2 6 6 H 1.07994 * 120.00498 * 0.26130 * 5 4 3 7 7 C 1.40375 * 119.99544 * 180.25860 * 5 4 3 8 8 N 1.30569 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99757 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47170 * 60.00436 * 9 7 5 11 11 H 1.48501 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47384 * 300.00068 * 9 7 5 13 13 N 1.32497 * 109.37244 * 180.29316 * 4 3 2 14 14 C 1.33823 * 109.62656 * 359.77521 * 13 4 3 15 15 C 1.40627 * 133.50582 * 179.97438 * 14 13 4 16 16 C 1.36947 * 118.23951 * 180.02562 * 15 14 13 17 17 C 1.38839 * 119.79422 * 359.97438 * 16 15 14 18 18 N 1.31804 * 121.50422 * 359.97438 * 17 16 15 19 19 C 1.32304 * 121.50242 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.46964 * 300.00352 * 1 2 3 22 22 H 1.09006 * 109.46698 * 60.00037 * 1 2 3 23 23 H 1.09003 * 109.47303 * 239.99844 * 2 1 3 24 24 H 1.08997 * 109.46896 * 120.00153 * 2 1 3 25 25 H 0.97005 * 120.00478 * 179.97438 * 8 7 5 26 26 H 1.08001 * 120.88702 * 0.02562 * 15 14 13 27 27 H 1.07996 * 120.10127 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.24801 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2902 2.1545 -1.1092 5 6 2.1407 1.7425 -2.4403 6 1 1.7825 0.7478 -2.6608 7 6 2.4565 2.6229 -3.4871 8 7 2.8900 3.8253 -3.2206 9 14 2.2579 2.0735 -5.2614 10 1 0.8395 1.7124 -5.5120 11 1 2.6543 3.1797 -6.1694 12 1 3.1214 0.8921 -5.5135 13 7 2.7190 3.3462 -0.7198 14 6 2.7398 3.4015 0.6172 15 6 3.1001 4.4003 1.5392 16 6 2.9992 4.1159 2.8750 17 6 2.5498 2.8670 3.2824 18 7 2.2135 1.9378 2.4102 19 6 2.2895 2.1529 1.1070 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1086 4.4336 -3.9440 26 1 3.4472 5.3662 1.2030 27 1 3.2675 4.8610 3.6093 28 1 2.4740 2.6519 4.3380 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = 70.859314 kcal Electronic energy + Delta-G solvation = -14168.222915 eV Core-core repulsion = 11798.576542 eV Total energy + Delta-G solvation = -2369.646373 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59248 -37.06102 -34.03614 -33.44302 -31.16879 -28.97031 -28.60725 -26.20670 -23.10444 -21.88132 -21.28823 -19.54485 -17.15316 -16.64282 -16.00873 -14.91135 -14.71135 -14.43044 -13.58512 -13.43633 -12.92841 -12.35315 -12.06453 -11.76852 -11.58115 -11.53968 -11.48568 -10.95109 -10.79113 -10.66445 -10.39372 -9.57129 -9.39797 -9.13303 -7.63816 -7.52722 -7.20192 -6.76227 -4.73728 2.17485 2.49343 2.96445 2.97688 2.99979 3.65863 3.90574 4.11465 4.95107 5.31168 5.38536 5.46791 5.73416 5.76222 5.84848 6.02035 6.08895 6.20887 6.28430 6.35628 6.61026 6.68434 6.88875 7.16525 7.31229 7.50523 7.52462 7.86667 8.14627 8.47957 8.82811 9.15982 9.78910 10.11032 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.010536 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.133860 B = 2657.003434 C = 3370.368282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.526 5.526 4 C 0.424 3.576 5 C -0.431 4.431 6 H 0.091 0.909 7 C 0.075 3.925 8 N -0.712 5.712 9 Si 0.922 3.078 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.263 1.263 13 N -0.531 5.531 14 C 0.073 3.927 15 C -0.103 4.103 16 C -0.173 4.173 17 C 0.034 3.966 18 N -0.480 5.480 19 C 0.190 3.810 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.282 0.718 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 -3.418 1.725 4.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.226 5.226 4 C 0.189 3.811 5 C -0.468 4.468 6 H 0.109 0.891 7 C -0.153 4.153 8 N -0.333 5.333 9 Si 0.745 3.255 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.187 1.187 13 N -0.255 5.255 14 C -0.058 4.058 15 C -0.131 4.131 16 C -0.196 4.196 17 C -0.128 4.128 18 N -0.194 5.194 19 C -0.050 4.050 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.731 -3.509 1.352 4.140 hybrid contribution -0.051 -0.054 -0.400 0.407 sum -1.782 -3.563 0.953 4.096 Atomic orbital electron populations 1.22121 0.96095 1.01361 1.02697 1.21256 0.94246 0.81489 1.02422 1.45264 1.60704 1.12194 1.04400 1.20412 0.89587 0.83994 0.87132 1.18529 1.40918 1.00864 0.86503 0.89115 1.25913 0.93546 0.94268 1.01552 1.69951 1.24128 1.04546 1.34714 0.86151 0.79940 0.79373 0.80059 1.18713 1.19902 1.18709 1.71412 1.30482 1.17919 1.05698 1.20199 0.98859 0.93052 0.93725 1.20139 1.03686 0.98080 0.91233 1.21158 1.04588 0.98259 0.95594 1.21778 1.04086 0.90105 0.96878 1.66100 1.17834 1.35151 1.00327 1.19093 1.06039 0.92552 0.87272 0.92057 0.92693 0.91899 0.90073 0.90951 0.90675 0.86442 0.86599 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.24 37.16 0.38 -2.42 15 2 C 0.13 2.50 6.63 -4.04 -0.03 2.47 15 3 N -0.53 -12.88 2.85 -115.30 -0.33 -13.21 15 4 C 0.42 11.44 7.41 -155.60 -1.15 10.29 15 5 C -0.43 -10.80 8.99 -38.06 -0.34 -11.14 15 6 H 0.09 2.04 7.10 -52.49 -0.37 1.67 15 7 C 0.08 1.82 5.50 -17.28 -0.10 1.72 15 8 N -0.71 -18.49 11.85 55.57 0.66 -17.83 15 9 Si 0.92 17.40 29.56 -169.99 -5.03 12.38 15 10 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 11 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 12 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 13 N -0.53 -15.28 9.34 -10.27 -0.10 -15.38 15 14 C 0.07 1.95 7.22 -84.86 -0.61 1.34 15 15 C -0.10 -2.36 10.20 -39.15 -0.40 -2.76 15 16 C -0.17 -3.40 10.03 -39.83 -0.40 -3.80 15 17 C 0.03 0.70 11.16 -17.34 -0.19 0.50 15 18 N -0.48 -11.27 10.39 -12.02 -0.12 -11.40 15 19 C 0.19 4.85 8.01 -155.51 -1.25 3.60 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.08 1.44 7.32 -51.93 -0.38 1.06 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.28 6.58 8.29 -40.82 -0.34 6.24 15 26 H 0.12 2.49 8.06 -52.49 -0.42 2.07 15 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.14 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 250.15 15.07 3.77 3.77 Total: -1.00 -30.53 250.15 -8.08 -38.61 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -2.85 Total: 3.26 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.09 Total: -0.20 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.11 Total: -57.81 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.53 -8.08 -38.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.466 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds